Statistics and Breed-wide Allele Frequency - Swedish Vallhund

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Swedish Vallhund (n=612)
1006	387 375 293 180	0.2304
1009	382 377 277 184	0.0531
1068	380 373 287 181	0.3685
1177	395 373 277 181	0.1675
1178	386 365 277 186	0.1650
1179	395 375 293 180	0.0025
1259	387 373 287 181	0.0131

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Swedish Vallhund (n=612)
2007	351 327 280	0.2328
2022	339 327 282	0.0531
2053	343 324 280	0.5466
2066	339 324 280	0.0008
2084	339 323 268	0.1667

Allele Frequencies

#	Locus Name	Allele	Swedish Vallhund (n=613)
1	AHT121	94	0.1191
		96	0.3026
		98	0.0759
		100	0.4323
		102	0.0644
		106	0.0057
2	AHT137	131	0.3271
		133	0.0204
		135	0.1175
		137	0.5310
		139	0.0016
		147	0.0024
3	AHTH130	119	0.1240
		121	0.0897
		127	0.0620
		129	0.0131
		131	0.0008
		133	0.0016
		135	0.7088
4	AHTh171-A	221	0.6517
		225	0.1550
		227	0.0359
		229	0.0555
		233	0.1020
5	AHTh260	246	0.5408
		248	0.2969
		250	0.0033
		254	0.1591
6	AHTk211	87	0.4184
		89	0.1338
		91	0.4478
7	AHTk253	282	0.1990
		286	0.0669
		288	0.3597
		290	0.0938
		292	0.1900
		294	0.0905
8	C22.279	116	0.3116
		118	0.0016
		124	0.6338
		130	0.0530
9	FH2001	132	0.2390
		140	0.0065
		144	0.6232
		148	0.0701
		152	0.0612
10	FH2054	148	0.1330
		152	0.1281
		156	0.6403
		160	0.0424
		164	0.0033
		172	0.0522
		176	0.0008
11	FH2848	232	0.1639
		236	0.0326
		238	0.1109
		240	0.6746
		244	0.0179
12	INRA21	95	0.0367
		97	0.2325
		99	0.0514
		101	0.6794
13	INU005	122	0.0465
		124	0.9038
		126	0.0498
14	INU030	144	0.2088
		148	0.0449
		150	0.6949
		152	0.0514
15	INU055	210	0.2684
		212	0.0930
		214	0.3581
		216	0.2806
16	LEI004	85	0.1354
		95	0.5277
		97	0.0538
		105	0.1509
		107	0.1321
17	REN105L03	231	0.1199
		233	0.2039
		235	0.1648
		239	0.0922
		241	0.4192
18	REN162C04	200	0.2398
		202	0.2896
		204	0.2064
		206	0.2610
		210	0.0033
19	REN169D01	202	0.2602
		210	0.1036
		216	0.1501
		218	0.4861
20	REN169O18	162	0.6444
		170	0.3515
		174	0.0041
21	REN247M23	268	0.8752
21	REN247M23	272	0.1248
22	REN54P11	226	0.8948
		234	0.0889
		244	0.0163
23	REN64E19	145	0.0750
		147	0.4584
		149	0.4649
		153	0.0016
24	VGL0760	12	0.0677
		14	0.1101
		15	0.0033
		20.2	0.2953
		21.2	0.2887
		22.2	0.0082
		23.2	0.0522
		24.2	0.1746
25	VGL0910	18.1	0.0016
		19.1	0.1395
		20.1	0.4592
		21.1	0.3458
		22.1	0.0522
		23.1	0.0016
26	VGL1063	8	0.0196
		12	0.1289
		13	0.1688
		14	0.0905
		15	0.4478
		16	0.0090
		19	0.0302
		20	0.0734
		21	0.0318
27	VGL1165	18	0.0147
		20	0.4600
		22	0.0008
		23	0.2577
		24	0.0261
		25	0.1485
		26	0.0922
28	VGL1828	15	0.0016
		16	0.0465
		17	0.2308
		18	0.0008
		19	0.6191
		20	0.1011
29	VGL2009	13	0.1256
		14	0.0196
		15	0.6558
		16	0.1933
		17	0.0057
30	VGL2409	14	0.2577
		15	0.0016
		16	0.4437
		17	0.2945
		18	0.0016
		19	0.0008
31	VGL2918	13	0.2039
		14	0.6746
		15	0.0367
		17.3	0.0008
		18.3	0.0432
		19.3	0.0383
		20.3	0.0024
32	VGL3008	16	0.2423
		17	0.4959
		18	0.1868
		19	0.0139
		20	0.0612
33	VGL3235	14	0.5832
		15	0.0840
		16	0.0073
		17	0.0155
		18	0.3100

Standard genetic assessment based on 33 autosomal STR loci

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	613	5.091	2.583	0.563	0.568	0.010
	SE		0.269	0.147	0.026	0.026	0.007

Standard genetic assessment based on 7 STRs in the DLA region

Swedish Vallhund

		N	Na	Ne	Ho	He	F
	Mean	613	3.571	2.641	0.615	0.597	-0.031
	SE		0.275	0.246	0.043	0.041	0.008

Standard genetic assessment for individual STR loci

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	613	6	3.305	0.662	0.697	0.050
2	AHT137	613	6	2.480	0.564	0.597	0.054
3	AHTH130	613	7	1.887	0.498	0.470	-0.058
4	AHTh171-A	613	5	2.157	0.548	0.536	-0.022
5	AHTh260	613	4	2.464	0.600	0.594	-0.010
6	AHTk211	613	3	2.541	0.622	0.606	-0.025
7	AHTk253	613	6	4.413	0.794	0.773	-0.027
8	C22.279	613	4	1.994	0.476	0.498	0.044
9	FH2001	613	5	2.202	0.543	0.546	0.005
10	FH2054	613	7	2.229	0.591	0.551	-0.071
11	FH2848	613	5	2.018	0.504	0.504	0.001
12	INRA21	613	4	1.924	0.478	0.480	0.005
13	INU005	613	3	1.217	0.163	0.179	0.087
14	INU030	613	4	1.883	0.480	0.469	-0.023
15	INU055	613	4	3.477	0.684	0.712	0.041
16	LEI004	613	5	2.941	0.620	0.660	0.061
17	REN105L03	613	5	3.740	0.762	0.733	-0.040
18	REN162C04	613	5	3.967	0.710	0.748	0.051
19	REN169D01	613	4	2.965	0.641	0.663	0.033
20	REN169O18	613	3	1.856	0.445	0.461	0.034
21	REN247M23	613	2	1.279	0.217	0.218	0.007
22	REN54P11	613	3	1.236	0.186	0.191	0.027
23	REN64E19	613	4	2.315	0.579	0.568	-0.019
24	VGL0760	613	8	4.534	0.780	0.779	-0.000
25	VGL0910	613	6	2.836	0.623	0.647	0.037
26	VGL1063	613	9	3.822	0.741	0.738	-0.003
27	VGL1165	613	7	3.231	0.705	0.691	-0.021
28	VGL1828	613	6	2.227	0.543	0.551	0.014
29	VGL2009	613	5	2.068	0.524	0.516	-0.014
30	VGL2409	613	6	2.857	0.649	0.650	0.001
31	VGL2918	613	7	1.995	0.494	0.499	0.009
32	VGL3008	613	5	2.912	0.659	0.657	-0.004
33	VGL3235	613	5	2.255	0.493	0.556	0.115

Standard genetic assessment for 7 STRs in the DLA region

Swedish Vallhund

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	613	5	3.937	0.780	0.746	-0.045
2	DLA I-4ACA	613	4	2.589	0.617	0.614	-0.005
3	DLA I-4BCT	613	3	2.869	0.692	0.651	-0.062
4	DLA1131	613	4	2.589	0.617	0.614	-0.005
5	5ACA	613	3	2.490	0.615	0.598	-0.028
6	5ACT	613	3	2.445	0.607	0.591	-0.027
7	5BCA	613	3	1.565	0.378	0.361	-0.048

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Swedish Vallhund

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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