Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Jul 11, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=140)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.396
1068	380 373 287 181	0.443
1160	386 369 289 176	0.004
1165	392 369 281 182	0.075
1166	388 379 277 184	0.046
1167	397 381 277 184	0.021

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=140)
2017	343 322 280	0.396
2022	339 327 282	0.046
2024	343 323 280	0.004
2026	351 324 284	0.014
2053	343 324 280	0.464
2080	339 325 276	0.075

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=141)
1	AHT121	88	0.011
		92	0.004
		98	0.298
		102	0.514
		104	0.082
		108	0.085
		112	0.007
2	AHT137	131	0.121
		137	0.848
		139	0.018
		147	0.007
		149	0.004
		153	0.004
3	AHTH130	123	0.181
		125	0.053
		127	0.684
		131	0.082
4	AHTh171-A	219	0.110
		221	0.004
		223	0.330
		225	0.177
		233	0.379
5	AHTh260	238	0.227
		242	0.553
		244	0.004
		246	0.145
		248	0.004
		252	0.067
6	AHTk211	87	0.067
		89	0.351
		91	0.032
		93	0.007
		95	0.543
7	AHTk253	286	0.004
		288	0.816
		292	0.181
8	C22.279	116	0.624
		118	0.085
		126	0.291
9	FH2001	124	0.057
		132	0.046
		144	0.635
		148	0.259
		152	0.004
10	FH2054	148	0.032
		152	0.518
		156	0.121
		164	0.050
		168	0.245
		176	0.035
11	FH2848	232	0.064
		234	0.035
		238	0.348
		240	0.390
		242	0.163
12	INRA21	91	0.004
		95	0.206
		97	0.142
		99	0.287
		101	0.362
13	INU005	124	0.365
		126	0.592
		132	0.043
14	INU030	146	0.057
		148	0.060
		150	0.727
		152	0.156
15	INU055	210	0.684
		214	0.035
		218	0.191
		220	0.089
16	LEI004	85	0.610
		95	0.387
		107	0.004
17	REN105L03	227	0.092
		231	0.096
		233	0.092
		235	0.248
		241	0.472
18	REN162C04	200	0.351
		202	0.004
		204	0.032
		206	0.433
		212	0.181
19	REN169D01	212	0.209
		216	0.787
		220	0.004
20	REN169O18	162	0.152
		164	0.085
		166	0.362
		168	0.301
		174	0.099
21	REN247M23	268	0.344
		270	0.099
		272	0.085
		274	0.014
		276	0.021
		278	0.436
22	REN54P11	226	0.557
		232	0.014
		234	0.418
		238	0.004
		240	0.007
23	REN64E19	139	0.128
		147	0.021
		151	0.099
		153	0.113
		155	0.638
24	VGL0760	13	0.057
		18.2	0.138
		19.2	0.216
		20.2	0.064
		21.2	0.305
		22.2	0.199
		23.2	0.018
		24.2	0.004
25	VGL0910	13	0.117
		17.1	0.124
		19.1	0.227
		20.1	0.351
		21.1	0.170
		22.1	0.011
26	VGL1063	9	0.004
		10	0.043
		12	0.759
		13	0.004
		14	0.046
		15	0.096
		18	0.050
27	VGL1165	14	0.039
		15	0.167
		16	0.014
		17	0.071
		19	0.060
		21	0.004
		22	0.209
		23	0.004
		25	0.213
		28	0.177
		29	0.043
28	VGL1828	15	0.011
		16	0.004
		17	0.096
		19	0.876
		20	0.014
29	VGL2009	9	0.004
		11	0.876
		12	0.043
		13	0.014
		14	0.043
		15	0.021
30	VGL2409	15	0.642
		16	0.195
		17	0.092
		18	0.071
31	VGL2918	13	0.142
		14	0.309
		18.3	0.018
		19.3	0.043
		20.3	0.160
		21.3	0.323
		22.3	0.007
32	VGL3008	10	0.018
		14	0.018
		15	0.273
		16	0.117
		17	0.181
		18	0.174
		20	0.060
		21	0.156
		22	0.004
33	VGL3235	14	0.546
		15	0.262
		16	0.177
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	141	5.303	2.735	0.584	0.568	-0.023
	SE		0.304	0.209	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	141	4.286	2.047	0.419	0.459	0.057
	SE		0.265	0.232	0.050	0.066	0.030

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	141	7	2.723	0.723	0.633	-0.143
2	AHT137	141	6	1.364	0.234	0.267	0.123
3	AHTH130	141	4	1.959	0.532	0.489	-0.087
4	AHTh171-A	141	5	3.375	0.766	0.704	-0.088
5	AHTh260	141	6	2.609	0.617	0.617	-0.000
6	AHTk211	141	5	2.363	0.596	0.577	-0.033
7	AHTk253	141	3	1.433	0.312	0.302	-0.033
8	C22.279	141	3	2.078	0.553	0.519	-0.067
9	FH2001	141	5	2.104	0.553	0.525	-0.054
10	FH2054	141	6	2.880	0.645	0.653	0.011
11	FH2848	141	5	3.280	0.730	0.695	-0.051
12	INRA21	141	5	3.626	0.688	0.724	0.050
13	INU005	141	3	2.058	0.567	0.514	-0.104
14	INU030	141	4	1.787	0.489	0.440	-0.111
15	INU055	141	4	1.945	0.489	0.486	-0.007
16	LEI004	141	3	1.918	0.525	0.479	-0.097
17	REN105L03	141	5	3.224	0.667	0.690	0.034
18	REN162C04	141	5	2.906	0.709	0.656	-0.081
19	REN169D01	141	3	1.507	0.319	0.336	0.051
20	REN169O18	141	5	3.816	0.766	0.738	-0.038
21	REN247M23	141	6	3.065	0.702	0.674	-0.042
22	REN54P11	141	5	2.061	0.553	0.515	-0.075
23	REN64E19	141	5	2.238	0.525	0.553	0.051
24	VGL0760	141	8	4.855	0.865	0.794	-0.090
25	VGL0910	141	6	4.293	0.759	0.767	0.011
26	VGL1063	141	7	1.691	0.397	0.409	0.028
27	VGL1165	141	11	6.231	0.787	0.840	0.062
28	VGL1828	141	5	1.288	0.206	0.223	0.079
29	VGL2009	141	6	1.296	0.227	0.229	0.007
30	VGL2409	141	4	2.157	0.511	0.536	0.048
31	VGL2918	141	7	4.047	0.773	0.753	-0.027
32	VGL3008	141	9	5.563	0.865	0.820	-0.055
33	VGL3235	141	4	2.508	0.617	0.601	-0.026

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	141	5	1.410	0.298	0.291	-0.025
2	DLA I-4ACA	141	5	2.667	0.543	0.625	0.132
3	DLA I-4BCT	141	4	2.725	0.560	0.633	0.115
4	DLA1131	141	4	2.334	0.504	0.572	0.119
5	5ACA	141	3	1.319	0.248	0.242	-0.026
6	5ACT	141	5	2.549	0.525	0.608	0.136
7	5BCA	141	4	1.325	0.257	0.245	-0.049

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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