Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesShiloh Shepherd (n=113)
1035386 373 277 1840.018
1052380 372 289 1840.358
1068380 373 287 1810.487
1165392 369 281 1820.075
1166388 379 277 1840.040
1167397 381 277 1840.022

DLA Class II Haplotype Frequencies

DLA2 #STR typesShiloh Shepherd (n=113)
2017343 322 2800.358
2022339 327 2820.040
2026351 324 2840.018
2053343 324 2800.509
2080339 325 2760.075

Allele Frequencies

#Locus NameAlleleShiloh Shepherd (n=113)
1AHT121 880.013
980.279
1020.527
1040.080
1080.093
1120.009
2AHT137 1310.128
1370.836
1390.018
1470.009
1490.004
1530.004
3AHTH130 1230.164
1250.044
1270.712
1310.080
4AHTh171-A 2190.115
2230.358
2250.195
2330.332
5AHTh260 2380.217
2420.566
2440.004
2460.142
2480.004
2520.066
6AHTk211 870.066
890.367
910.035
930.004
950.527
7AHTk253 2860.004
2880.805
2920.190
8C22.279 1160.646
1180.075
1260.279
9FH2001 1240.066
1320.040
1440.650
1480.243
10FH2054 1480.035
1520.522
1560.115
1640.044
1680.248
1760.035
11FH2848 2320.062
2340.040
2380.336
2400.416
2420.146
12INRA21 910.004
950.204
970.137
990.279
1010.376
13INU005 1240.381
1260.571
1320.049
14INU030 1460.058
1480.058
1500.721
1520.164
15INU055 2100.668
2140.031
2180.199
2200.102
16LEI004 850.628
950.367
1070.004
17REN105L03 2270.097
2310.106
2330.084
2350.243
2410.469
18REN162C04 2000.358
2040.031
2060.434
2120.177
19REN169D01 2120.217
2160.783
20REN169O18 1620.150
1640.093
1660.381
1680.305
1740.071
21REN247M23 2680.354
2700.088
2720.075
2740.018
2760.018
2780.447
22REN54P11 2260.562
2320.013
2340.416
2400.009
23REN64E19 1390.128
1470.022
1510.093
1530.106
1550.650
24VGL0760 130.049
18.20.137
19.20.212
20.20.071
21.20.323
22.20.186
23.20.022
25VGL0910 130.128
17.10.133
19.10.217
20.10.354
21.10.164
22.10.004
26VGL1063 90.004
100.044
120.752
140.053
150.097
180.049
27VGL1165 140.044
150.150
160.018
170.088
190.062
220.208
250.204
280.181
290.044
28VGL1828 150.013
160.004
170.084
190.885
200.013
29VGL2009 110.872
120.049
130.018
140.035
150.027
30VGL2409 150.624
160.199
170.106
180.071
31VGL2918 130.128
140.305
18.30.022
19.30.044
20.30.168
21.30.332
32VGL3008 100.018
140.022
150.261
160.133
170.173
180.186
200.053
210.155
33VGL3235 140.531
150.270
160.186
170.013

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

  NNaNeHoHeF
Mean1134.9092.7240.5860.567-0.028
 SE 0.2550.2100.0310.0290.013

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

  NNaNeHoHeF
Mean1134.0001.9910.3970.4480.083
 SE 0.2860.2180.0480.0650.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#LocusNNaNeHoHeF
1AHT12111362.7010.7080.630-0.124
2AHT13711361.3960.2480.2840.127
3AHTH13011341.8430.5130.457-0.122
4AHTh171-A11343.4520.7790.710-0.096
5AHTh26011362.5490.6190.608-0.019
6AHTk21111352.3930.6280.582-0.079
7AHTk25311331.4600.3190.315-0.011
8C22.27911331.9970.5580.499-0.117
9FH200111342.0480.5930.512-0.159
10FH205411362.8430.6640.648-0.024
11FH284811353.1970.7170.687-0.043
12INRA2111353.5790.7080.7210.017
13INU00511332.1140.5930.527-0.125
14INU03011341.8060.4870.446-0.090
15INU05511342.0110.5130.503-0.021
16LEI00411331.8880.5130.470-0.091
17REN105L0311353.2570.6900.6930.004
18REN162C0411342.8670.6990.651-0.074
19REN169D0111321.5140.3270.3400.036
20REN169O1811353.6460.7610.726-0.049
21REN247M2311362.9490.6900.661-0.044
22REN54P1111342.0450.5490.511-0.074
23REN64E1911352.1740.5130.5400.050
24VGL076011374.7470.8500.789-0.076
25VGL091011364.2880.7610.7670.007
26VGL106311361.7170.3890.4180.067
27VGL116511396.4050.7790.8440.077
28VGL182811351.2650.1770.2090.155
29VGL200911351.3080.2300.2360.023
30VGL240911342.2460.5220.5550.059
31VGL291811363.9920.7610.749-0.015
32VGL300811385.6280.8500.822-0.033
33VGL323511342.5670.6370.611-0.044

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#LocusNNaNeHoHeF
1DLA I-3CCA11351.3840.2830.278-0.020
2DLA I-4ACA11352.5600.5130.6090.158
3DLA I-4BCT11342.6500.5310.6230.147
4DLA113111332.3020.4870.5660.139
55ACA11331.3060.2300.2340.018
65ACT11342.4220.4870.5870.171
75BCA11341.3160.2480.240-0.031