Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Sep 18, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=147)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.398
1068	380 373 287 181	0.435
1160	386 369 289 176	0.003
1165	392 369 281 182	0.078
1166	388 379 277 184	0.048
1167	397 381 277 184	0.024

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=147)
2017	343 322 280	0.398
2022	339 327 282	0.048
2024	343 323 280	0.003
2026	351 324 284	0.014
2053	343 324 280	0.459
2080	339 325 276	0.078

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=147)
1	AHT121	88	0.010
		92	0.003
		98	0.289
		102	0.520
		104	0.082
		108	0.088
		112	0.007
2	AHT137	131	0.116
		137	0.850
		139	0.017
		147	0.010
		149	0.003
		153	0.003
3	AHTH130	123	0.187
		125	0.051
		127	0.684
		131	0.078
4	AHTh171-A	219	0.105
		221	0.003
		223	0.320
		225	0.184
		233	0.388
5	AHTh260	238	0.221
		242	0.554
		244	0.003
		246	0.146
		248	0.003
		252	0.071
6	AHTk211	87	0.068
		89	0.340
		91	0.034
		93	0.007
		95	0.551
7	AHTk253	286	0.003
		288	0.816
		292	0.180
8	C22.279	116	0.636
		118	0.082
		126	0.282
9	FH2001	124	0.054
		132	0.048
		144	0.643
		148	0.252
		152	0.003
10	FH2054	148	0.034
		152	0.517
		156	0.119
		164	0.051
		168	0.241
		176	0.037
11	FH2848	232	0.061
		234	0.037
		238	0.340
		240	0.395
		242	0.167
12	INRA21	91	0.003
		93	0.003
		95	0.201
		97	0.139
		99	0.286
		101	0.367
13	INU005	124	0.361
		126	0.599
		132	0.041
14	INU030	146	0.058
		148	0.061
		150	0.728
		152	0.153
15	INU055	210	0.673
		214	0.034
		218	0.207
		220	0.085
16	LEI004	85	0.602
		95	0.395
		107	0.003
17	REN105L03	227	0.088
		231	0.095
		233	0.092
		235	0.241
		241	0.483
18	REN162C04	200	0.350
		202	0.003
		204	0.031
		206	0.432
		212	0.184
19	REN169D01	212	0.207
		216	0.789
		220	0.003
20	REN169O18	162	0.156
		164	0.085
		166	0.354
		168	0.310
		174	0.095
21	REN247M23	268	0.340
		270	0.099
		272	0.088
		274	0.014
		276	0.024
		278	0.435
22	REN54P11	226	0.558
		232	0.014
		234	0.418
		238	0.003
		240	0.007
23	REN64E19	139	0.122
		147	0.020
		151	0.102
		153	0.112
		155	0.643
24	VGL0760	13	0.058
		18.2	0.133
		19.2	0.214
		20.2	0.061
		21.2	0.303
		22.2	0.207
		23.2	0.020
		24.2	0.003
25	VGL0910	13	0.116
		17.1	0.122
		19.1	0.221
		20.1	0.354
		21.1	0.177
		22.1	0.010
26	VGL1063	9	0.003
		10	0.041
		12	0.762
		13	0.003
		14	0.044
		15	0.092
		18	0.054
27	VGL1165	14	0.037
		15	0.167
		16	0.014
		17	0.075
		19	0.061
		21	0.003
		22	0.204
		23	0.003
		25	0.207
		28	0.187
		29	0.041
28	VGL1828	15	0.010
		16	0.003
		17	0.095
		19	0.878
		20	0.014
29	VGL2009	9	0.003
		11	0.874
		12	0.048
		13	0.014
		14	0.041
		15	0.020
30	VGL2409	15	0.650
		16	0.190
		17	0.092
		18	0.068
31	VGL2918	13	0.139
		14	0.310
		18.3	0.017
		19.3	0.044
		20.3	0.156
		21.3	0.327
		22.3	0.007
32	VGL3008	10	0.017
		14	0.017
		15	0.272
		16	0.112
		17	0.180
		18	0.177
		20	0.058
		21	0.163
		22	0.003
33	VGL3235	14	0.554
		15	0.255
		16	0.177
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	147	5.333	2.726	0.578	0.567	-0.015
	SE		0.305	0.209	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	147	4.286	2.061	0.419	0.463	0.063
	SE		0.265	0.235	0.049	0.066	0.032

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	147	7	2.710	0.707	0.631	-0.121
2	AHT137	147	6	1.357	0.231	0.263	0.121
3	AHTH130	147	4	1.956	0.524	0.489	-0.071
4	AHTh171-A	147	5	3.362	0.741	0.703	-0.055
5	AHTh260	147	6	2.612	0.619	0.617	-0.003
6	AHTk211	147	5	2.352	0.592	0.575	-0.030
7	AHTk253	147	3	1.431	0.299	0.301	0.006
8	C22.279	147	3	2.037	0.537	0.509	-0.056
9	FH2001	147	5	2.075	0.544	0.518	-0.050
10	FH2054	147	6	2.899	0.646	0.655	0.013
11	FH2848	147	5	3.286	0.728	0.696	-0.046
12	INRA21	147	6	3.619	0.687	0.724	0.051
13	INU005	147	3	2.041	0.565	0.510	-0.107
14	INU030	147	4	1.785	0.490	0.440	-0.114
15	INU055	147	4	1.980	0.476	0.495	0.038
16	LEI004	147	3	1.930	0.537	0.482	-0.115
17	REN105L03	147	5	3.155	0.653	0.683	0.044
18	REN162C04	147	5	2.907	0.701	0.656	-0.068
19	REN169D01	147	3	1.502	0.320	0.334	0.043
20	REN169O18	147	5	3.821	0.755	0.738	-0.023
21	REN247M23	147	6	3.091	0.694	0.676	-0.026
22	REN54P11	147	5	2.056	0.551	0.514	-0.073
23	REN64E19	147	5	2.214	0.524	0.548	0.045
24	VGL0760	147	8	4.861	0.850	0.794	-0.071
25	VGL0910	147	6	4.278	0.769	0.766	-0.003
26	VGL1063	147	7	1.679	0.395	0.404	0.024
27	VGL1165	147	11	6.246	0.789	0.840	0.060
28	VGL1828	147	5	1.283	0.204	0.221	0.075
29	VGL2009	147	6	1.301	0.218	0.231	0.059
30	VGL2409	147	4	2.121	0.503	0.529	0.048
31	VGL2918	147	7	4.022	0.755	0.751	-0.005
32	VGL3008	147	9	5.524	0.864	0.819	-0.055
33	VGL3235	147	4	2.476	0.605	0.596	-0.016

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	147	5	1.421	0.299	0.296	-0.010
2	DLA I-4ACA	147	5	2.707	0.544	0.631	0.137
3	DLA I-4BCT	147	4	2.747	0.551	0.636	0.134
4	DLA1131	147	4	2.331	0.497	0.571	0.130
5	5ACA	147	3	1.322	0.252	0.243	-0.034
6	5ACT	147	5	2.562	0.524	0.610	0.141
7	5BCA	147	4	1.335	0.265	0.251	-0.057

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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