Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

Updated Aug 20, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd (n=144)
1035	386 373 277 184	0.014
1052	380 372 289 184	0.389
1068	380 373 287 181	0.444
1160	386 369 289 176	0.003
1165	392 369 281 182	0.076
1166	388 379 277 184	0.049
1167	397 381 277 184	0.024

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd (n=144)
2017	343 322 280	0.389
2022	339 327 282	0.049
2024	343 323 280	0.003
2026	351 324 284	0.014
2053	343 324 280	0.469
2080	339 325 276	0.076

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd (n=145)
1	AHT121	88	0.010
		92	0.003
		98	0.290
		102	0.524
		104	0.083
		108	0.083
		112	0.007
2	AHT137	131	0.117
		137	0.848
		139	0.017
		147	0.010
		149	0.003
		153	0.003
3	AHTH130	123	0.190
		125	0.052
		127	0.679
		131	0.079
4	AHTh171-A	219	0.107
		221	0.003
		223	0.321
		225	0.186
		233	0.383
5	AHTh260	238	0.224
		242	0.552
		244	0.003
		246	0.148
		248	0.003
		252	0.069
6	AHTk211	87	0.069
		89	0.341
		91	0.031
		93	0.007
		95	0.552
7	AHTk253	286	0.003
		288	0.821
		292	0.176
8	C22.279	116	0.631
		118	0.083
		126	0.286
9	FH2001	124	0.055
		132	0.048
		144	0.638
		148	0.255
		152	0.003
10	FH2054	148	0.034
		152	0.514
		156	0.117
		164	0.052
		168	0.245
		176	0.038
11	FH2848	232	0.062
		234	0.038
		238	0.338
		240	0.397
		242	0.166
12	INRA21	91	0.003
		95	0.200
		97	0.141
		99	0.283
		101	0.372
13	INU005	124	0.359
		126	0.600
		132	0.041
14	INU030	146	0.059
		148	0.059
		150	0.728
		152	0.155
15	INU055	210	0.676
		214	0.034
		218	0.203
		220	0.086
16	LEI004	85	0.607
		95	0.390
		107	0.003
17	REN105L03	227	0.090
		231	0.093
		233	0.090
		235	0.245
		241	0.483
18	REN162C04	200	0.352
		202	0.003
		204	0.031
		206	0.428
		212	0.186
19	REN169D01	212	0.207
		216	0.790
		220	0.003
20	REN169O18	162	0.159
		164	0.086
		166	0.355
		168	0.303
		174	0.097
21	REN247M23	268	0.341
		270	0.097
		272	0.090
		274	0.014
		276	0.024
		278	0.434
22	REN54P11	226	0.555
		232	0.014
		234	0.421
		238	0.003
		240	0.007
23	REN64E19	139	0.124
		147	0.021
		151	0.100
		153	0.110
		155	0.645
24	VGL0760	13	0.055
		18.2	0.134
		19.2	0.210
		20.2	0.062
		21.2	0.307
		22.2	0.207
		23.2	0.021
		24.2	0.003
25	VGL0910	13	0.117
		17.1	0.124
		19.1	0.221
		20.1	0.355
		21.1	0.172
		22.1	0.010
26	VGL1063	9	0.003
		10	0.041
		12	0.762
		13	0.003
		14	0.045
		15	0.093
		18	0.052
27	VGL1165	14	0.038
		15	0.169
		16	0.014
		17	0.072
		19	0.062
		21	0.003
		22	0.207
		23	0.003
		25	0.207
		28	0.183
		29	0.041
28	VGL1828	15	0.010
		16	0.003
		17	0.097
		19	0.876
		20	0.014
29	VGL2009	9	0.003
		11	0.872
		12	0.048
		13	0.014
		14	0.041
		15	0.021
30	VGL2409	15	0.645
		16	0.193
		17	0.093
		18	0.069
31	VGL2918	13	0.138
		14	0.307
		18.3	0.017
		19.3	0.045
		20.3	0.155
		21.3	0.331
		22.3	0.007
32	VGL3008	10	0.017
		14	0.017
		15	0.272
		16	0.114
		17	0.183
		18	0.176
		20	0.059
		21	0.159
		22	0.003
33	VGL3235	14	0.552
		15	0.259
		16	0.176
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	145	5.303	2.728	0.579	0.567	-0.016
	SE		0.304	0.209	0.031	0.029	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd

		N	Na	Ne	Ho	He	F
	Mean	145	4.286	2.054	0.418	0.461	0.062
	SE		0.265	0.233	0.050	0.066	0.031

Standard genetic assessment for individual STR loci

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	145	7	2.685	0.710	0.628	-0.132
2	AHT137	145	6	1.363	0.234	0.266	0.119
3	AHTH130	145	4	1.975	0.531	0.494	-0.076
4	AHTh171-A	145	5	3.385	0.745	0.705	-0.057
5	AHTh260	145	6	2.622	0.621	0.619	-0.003
6	AHTk211	145	5	2.344	0.586	0.573	-0.023
7	AHTk253	145	3	1.420	0.303	0.296	-0.027
8	C22.279	145	3	2.054	0.545	0.513	-0.062
9	FH2001	145	5	2.094	0.552	0.523	-0.056
10	FH2054	145	6	2.916	0.648	0.657	0.013
11	FH2848	145	5	3.288	0.724	0.696	-0.041
12	INRA21	145	5	3.589	0.683	0.721	0.054
13	INU005	145	3	2.039	0.559	0.510	-0.096
14	INU030	145	4	1.785	0.490	0.440	-0.114
15	INU055	145	4	1.973	0.483	0.493	0.021
16	LEI004	145	3	1.922	0.538	0.480	-0.121
17	REN105L03	145	5	3.147	0.655	0.682	0.040
18	REN162C04	145	5	2.922	0.703	0.658	-0.069
19	REN169D01	145	3	1.501	0.317	0.334	0.049
20	REN169O18	145	5	3.844	0.759	0.740	-0.025
21	REN247M23	145	6	3.092	0.690	0.677	-0.019
22	REN54P11	145	5	2.060	0.552	0.515	-0.072
23	REN64E19	145	5	2.204	0.517	0.546	0.053
24	VGL0760	145	8	4.839	0.855	0.793	-0.078
25	VGL0910	145	6	4.276	0.766	0.766	0.001
26	VGL1063	145	7	1.678	0.393	0.404	0.027
27	VGL1165	145	11	6.249	0.786	0.840	0.064
28	VGL1828	145	5	1.287	0.207	0.223	0.073
29	VGL2009	145	6	1.306	0.221	0.234	0.058
30	VGL2409	145	4	2.144	0.510	0.533	0.043
31	VGL2918	145	7	4.012	0.759	0.751	-0.010
32	VGL3008	145	9	5.534	0.869	0.819	-0.061
33	VGL3235	145	4	2.485	0.607	0.598	-0.016

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	145	5	1.418	0.297	0.295	-0.006
2	DLA I-4ACA	145	5	2.698	0.549	0.629	0.128
3	DLA I-4BCT	145	4	2.738	0.552	0.635	0.131
4	DLA1131	145	4	2.324	0.497	0.570	0.128
5	5ACA	145	3	1.318	0.248	0.241	-0.029
6	5ACT	145	5	2.549	0.524	0.608	0.137
7	5BCA	145	4	1.331	0.262	0.249	-0.054

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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