Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

Updated Jul 3, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiloh Shepherd, ISSA (n=324)
1001	380 373 281 182	0.003
1009	382 377 277 184	0.006
1035	386 373 277 184	0.003
1045	376 371 277 186	0.002
1052	380 372 289 184	0.369
1068	380 373 287 181	0.269
1152	390 373 281 180	0.009
1165	392 369 281 182	0.208
1166	388 379 277 184	0.039
1167	397 381 277 184	0.085
1172	390 369 289 188	0.008

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiloh Shepherd, ISSA (n=324)
2001	343 324 284	0.003
2003	343 324 282	0.008
2017	343 322 280	0.369
2022	339 327 282	0.045
2026	351 324 284	0.003
2039	345 327 276	0.002
2053	343 324 280	0.363
2080	339 325 276	0.208

Allele Frequencies

#	Locus Name	Allele	Shiloh Shepherd, ISSA (n=324)
1	AHT121	88	0.002
		92	0.005
		94	0.008
		98	0.157
		102	0.617
		104	0.099
		106	0.008
		108	0.105
2	AHT137	131	0.196
		137	0.773
		139	0.006
		141	0.003
		145	0.005
		147	0.006
		153	0.011
3	AHTH130	119	0.002
		123	0.170
		125	0.017
		127	0.688
		129	0.014
		131	0.110
4	AHTh171-A	219	0.099
		223	0.344
		225	0.216
		229	0.008
		233	0.329
		235	0.005
5	AHTh260	238	0.073
		242	0.761
		246	0.090
		250	0.009
		252	0.068
6	AHTk211	87	0.131
		89	0.222
		91	0.083
		95	0.560
		97	0.003
7	AHTk253	288	0.873
7	AHTk253	292	0.127
8	C22.279	116	0.708
		118	0.011
		120	0.009
		124	0.046
		126	0.218
		134	0.008
9	FH2001	124	0.125
		132	0.250
		140	0.011
		144	0.389
		148	0.224
		152	0.002
10	FH2054	148	0.049
		152	0.185
		156	0.278
		160	0.037
		164	0.097
		168	0.256
		172	0.002
		176	0.096
11	FH2848	234	0.005
		236	0.015
		238	0.489
		240	0.407
		242	0.082
		244	0.002
12	INRA21	91	0.002
		93	0.020
		95	0.082
		97	0.045
		99	0.216
		101	0.636
13	INU005	110	0.015
		122	0.015
		124	0.336
		126	0.633
14	INU030	144	0.019
		146	0.063
		148	0.069
		150	0.631
		152	0.218
15	INU055	210	0.486
		212	0.003
		214	0.035
		218	0.446
		220	0.029
16	LEI004	85	0.563
16	LEI004	95	0.437
17	REN105L03	227	0.042
		231	0.144
		233	0.116
		235	0.275
		241	0.424
18	REN162C04	200	0.113
		204	0.049
		206	0.590
		208	0.012
		212	0.236
19	REN169D01	202	0.012
		208	0.003
		212	0.227
		214	0.005
		216	0.742
		218	0.011
20	REN169O18	136	0.005
		162	0.373
		164	0.125
		166	0.215
		168	0.281
		174	0.002
21	REN247M23	268	0.378
		270	0.106
		272	0.145
		274	0.005
		278	0.366
22	REN54P11	226	0.537
		232	0.009
		234	0.454
23	REN64E19	139	0.113
		143	0.008
		147	0.012
		151	0.235
		153	0.113
		155	0.520
24	VGL0760	12	0.020
		13	0.056
		15	0.005
		18.2	0.028
		19.2	0.287
		20.2	0.134
		21.2	0.160
		22.2	0.281
		23.2	0.029
25	VGL0910	13	0.006
		17.1	0.150
		18.1	0.002
		19.1	0.060
		20.1	0.441
		21.1	0.323
		22.1	0.014
		24.1	0.005
26	VGL1063	10	0.117
		12	0.796
		13	0.006
		14	0.063
		15	0.017
27	VGL1165	14	0.011
		15	0.137
		16	0.032
		17	0.154
		19	0.011
		22	0.102
		25	0.304
		26	0.046
		27	0.002
		28	0.201
28	VGL1828	17	0.008
		19	0.974
		21	0.019
29	VGL2009	9	0.015
		10	0.011
		11	0.776
		12	0.102
		13	0.006
		14	0.090
30	VGL2409	14	0.012
		15	0.651
		16	0.177
		17	0.051
		18	0.106
		19	0.002
31	VGL2918	13	0.045
		14	0.179
		18.3	0.002
		19.3	0.106
		20.3	0.258
		21.3	0.381
		22.3	0.029
32	VGL3008	10	0.003
		14	0.040
		15	0.221
		16	0.113
		17	0.236
		18	0.069
		19	0.005
		20	0.114
		21	0.196
		22	0.003
33	VGL3235	12	0.017
		14	0.511
		15	0.190
		16	0.269
		17	0.014

Standard genetic assessment based on 33 autosomal STR loci

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	324	5.818	2.704	0.581	0.563	-0.031
	SE		0.328	0.203	0.031	0.030	0.008

Standard genetic assessment based on 7 STRs in the DLA region

Shiloh Shepherd, ISSA

		N	Na	Ne	Ho	He	F
	Mean	324	5.286	2.650	0.610	0.585	-0.040
	SE		0.596	0.294	0.054	0.049	0.005

Standard genetic assessment for individual STR loci

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	324	8	2.343	0.556	0.573	0.031
2	AHT137	324	7	1.571	0.373	0.364	-0.027
3	AHTH130	324	6	1.942	0.522	0.485	-0.076
4	AHTh171-A	324	6	3.534	0.756	0.717	-0.055
5	AHTh260	324	5	1.676	0.429	0.403	-0.064
6	AHTk211	324	5	2.582	0.605	0.613	0.013
7	AHTk253	324	2	1.284	0.241	0.221	-0.089
8	C22.279	324	6	1.813	0.478	0.449	-0.067
9	FH2001	324	6	3.577	0.735	0.720	-0.020
10	FH2054	324	8	5.013	0.806	0.801	-0.006
11	FH2848	324	6	2.426	0.599	0.588	-0.019
12	INRA21	324	6	2.174	0.543	0.540	-0.006
13	INU005	324	4	1.946	0.543	0.486	-0.118
14	INU030	324	5	2.198	0.503	0.545	0.077
15	INU055	324	5	2.287	0.630	0.563	-0.119
16	LEI004	324	2	1.968	0.478	0.492	0.028
17	REN105L03	324	5	3.433	0.735	0.709	-0.036
18	REN162C04	324	5	2.389	0.599	0.581	-0.030
19	REN169D01	324	6	1.659	0.404	0.397	-0.018
20	REN169O18	324	6	3.571	0.735	0.720	-0.020
21	REN247M23	324	5	3.235	0.747	0.691	-0.081
22	REN54P11	324	3	2.023	0.565	0.506	-0.117
23	REN64E19	324	6	2.848	0.694	0.649	-0.070
24	VGL0760	324	9	4.757	0.833	0.790	-0.055
25	VGL0910	324	8	3.076	0.691	0.675	-0.024
26	VGL1063	324	5	1.533	0.336	0.348	0.033
27	VGL1165	324	10	5.287	0.821	0.811	-0.013
28	VGL1828	324	3	1.054	0.052	0.051	-0.021
29	VGL2009	324	6	1.609	0.386	0.379	-0.019
30	VGL2409	324	6	2.129	0.549	0.530	-0.036
31	VGL2918	324	7	3.877	0.765	0.742	-0.032
32	VGL3008	324	10	5.712	0.852	0.825	-0.033
33	VGL3235	324	5	2.706	0.596	0.630	0.055

Standard genetic assessment for 7 STRs in the DLA region

Shiloh Shepherd, ISSA

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	324	8	2.162	0.559	0.537	-0.040
2	DLA I-4ACA	324	7	3.676	0.756	0.728	-0.039
3	DLA I-4BCT	324	4	3.564	0.759	0.719	-0.055
4	DLA1131	324	6	2.714	0.657	0.632	-0.041
5	5ACA	324	4	1.626	0.392	0.385	-0.018
6	5ACT	324	4	3.092	0.719	0.677	-0.063
7	5BCA	324	4	1.718	0.429	0.418	-0.026

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiloh Shepherd, ISSA

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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