Statistics and Breed-wide Allele Frequency - Shiba Inu

Updated Jul 13, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Shiba Inu (n=199)
1007	380 372 281 182	0.003
1019	380 373 287 185	0.003
1054	382 379 277 184	0.352
1081	395 379 289 178	0.005
1091	381 371 277 181	0.214
1109	381 379 291 186	0.028
1133	378 365 287 172	0.005
1160	386 369 289 176	0.010
1191	388 373 260 186	0.246
1192	376 373 281 182	0.020
1193	382 383 277 184	0.003
1194	385 369 291 178	0.008
1195	388 373 289 181	0.020
1196	390 372 291 180	0.015
1197	390 373 289 186	0.015
1198	392 371 277 184	0.053
1281	382 365 277 186	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Shiba Inu (n=199)
2001	343 324 284	0.015
2006	339 325 280	0.003
2015	339 327 280	0.053
2016	339 323 284	0.003
2018	339 324 284	0.241
2032	339 323 280	0.005
2067	343 322 284	0.206
2071	339 322 286	0.003
2083	339 324 282	0.005
2097	343 327 276	0.008
2098	343 323 282	0.010
2105	341 325 276	0.015
2106	341 325 286	0.357
2107	343 322 286	0.003
2108	343 324 294	0.020
2109	345 322 276	0.028
2110	347 325 268	0.005
2111	351 324 276	0.020
2129	343 322 294	0.003

Allele Frequencies

#	Locus Name	Allele	Shiba Inu (n=199)
1	AHT121	90	0.003
		92	0.068
		96	0.003
		100	0.259
		102	0.226
		104	0.440
		106	0.003
2	AHT137	131	0.118
		133	0.201
		135	0.003
		137	0.025
		141	0.093
		145	0.093
		149	0.131
		151	0.118
		153	0.219
3	AHTH130	111	0.010
		115	0.003
		119	0.008
		121	0.834
		125	0.018
		129	0.005
		131	0.008
		133	0.035
		135	0.080
4	AHTh171-A	219	0.824
		221	0.003
		225	0.013
		227	0.138
		229	0.008
		233	0.015
5	AHTh260	236	0.093
		242	0.035
		244	0.563
		246	0.168
		248	0.070
		252	0.070
6	AHTk211	87	0.259
		89	0.181
		91	0.364
		93	0.020
		95	0.176
7	AHTk253	282	0.138
		286	0.131
		288	0.284
		290	0.291
		292	0.108
		294	0.048
8	C22.279	116	0.045
		118	0.048
		120	0.216
		122	0.005
		124	0.329
		126	0.113
		130	0.118
		132	0.126
9	FH2001	124	0.035
		132	0.106
		140	0.068
		144	0.377
		148	0.008
		152	0.136
		154	0.269
		156	0.003
10	FH2054	152	0.013
		156	0.123
		160	0.457
		164	0.171
		168	0.121
		172	0.070
		176	0.045
11	FH2848	230	0.015
		232	0.035
		234	0.010
		238	0.344
		242	0.593
		246	0.003
12	INRA21	95	0.133
		97	0.791
		99	0.018
		101	0.058
13	INU005	106	0.284
		124	0.452
		126	0.058
		130	0.121
		132	0.085
14	INU030	142	0.030
		144	0.442
		146	0.020
		148	0.043
		150	0.435
		152	0.030
15	INU055	210	0.410
		212	0.279
		214	0.128
		216	0.133
		220	0.043
		222	0.008
16	LEI004	85	0.384
		95	0.475
		97	0.141
17	REN105L03	227	0.093
		229	0.126
		231	0.023
		233	0.015
		235	0.065
		237	0.603
		239	0.063
		241	0.013
18	REN162C04	202	0.080
		204	0.015
		206	0.460
		208	0.003
		210	0.354
		212	0.088
19	REN169D01	202	0.319
		210	0.075
		212	0.204
		216	0.281
		218	0.121
20	REN169O18	162	0.028
		164	0.485
		166	0.156
		168	0.214
		170	0.116
		172	0.003
21	REN247M23	268	0.231
		270	0.545
		272	0.126
		276	0.010
		278	0.088
22	REN54P11	226	0.010
		228	0.166
		230	0.078
		232	0.083
		236	0.015
		238	0.204
		240	0.244
		242	0.201
23	REN64E19	139	0.003
		141	0.008
		145	0.161
		147	0.055
		149	0.359
		151	0.146
		153	0.101
		155	0.141
		157	0.028
24	VGL0760	13	0.570
		14	0.176
		15	0.020
		16	0.033
		17	0.113
		19	0.008
		21.2	0.053
		22.2	0.013
		23.2	0.013
		24.2	0.003
25	VGL0910	15.1	0.005
		16.1	0.276
		17.1	0.008
		18.1	0.178
		19.1	0.455
		20.1	0.060
		21.1	0.010
		22.1	0.008
26	VGL1063	10	0.008
		12	0.013
		13	0.038
		14	0.734
		15	0.085
		16	0.025
		17	0.008
		18	0.083
		19	0.005
		20	0.003
27	VGL1165	15	0.008
		16	0.003
		18	0.020
		21	0.070
		26	0.065
		27	0.098
		28	0.128
		30	0.128
		31	0.467
		32	0.013
28	VGL1828	14	0.028
		15	0.296
		16	0.053
		18	0.025
		19	0.148
		20	0.028
		20.3	0.025
		21	0.294
		22	0.101
		23	0.003
29	VGL2009	9	0.035
		11	0.005
		12	0.141
		13	0.595
		14	0.143
		15	0.078
		16	0.003
30	VGL2409	13	0.008
		13.3	0.035
		14	0.005
		14.3	0.015
		15	0.196
		16	0.357
		17	0.098
		18	0.229
		19	0.058
31	VGL2918	12	0.058
		13	0.148
		14	0.198
		15	0.028
		16	0.010
		17.3	0.020
		18.3	0.065
		19.3	0.364
		20.3	0.008
		21.3	0.015
		22.3	0.085
32	VGL3008	12	0.196
		14	0.209
		15	0.085
		16	0.018
		17	0.053
		18	0.382
		19	0.023
		20	0.035
33	VGL3235	12	0.241
		13	0.299
		14	0.098
		15	0.030
		16	0.013
		17	0.204
		18	0.080
		19	0.035

Standard genetic assessment based on 33 autosomal STR loci

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	199	7.242	3.456	0.664	0.666	0.005
	SE		0.335	0.212	0.025	0.025	0.006

Standard genetic assessment based on 7 STRs in the DLA region

Shiba Inu

		N	Na	Ne	Ho	He	F
	Mean	199	7.286	3.135	0.662	0.672	0.014
	SE		0.720	0.179	0.019	0.022	0.013

Standard genetic assessment for individual STR loci

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	199	7	3.164	0.673	0.684	0.015
2	AHT137	199	9	6.619	0.814	0.849	0.041
3	AHTH130	199	9	1.420	0.271	0.296	0.083
4	AHTh171-A	199	6	1.431	0.312	0.301	-0.034
5	AHTh260	199	6	2.741	0.618	0.635	0.027
6	AHTk211	199	5	3.791	0.744	0.736	-0.010
7	AHTk253	199	6	4.637	0.769	0.784	0.020
8	C22.279	199	8	4.953	0.804	0.798	-0.007
9	FH2001	199	8	4.004	0.774	0.750	-0.032
10	FH2054	199	7	3.634	0.683	0.725	0.057
11	FH2848	199	6	2.120	0.508	0.528	0.039
12	INRA21	199	4	1.544	0.352	0.352	0.001
13	INU005	199	5	3.222	0.709	0.690	-0.027
14	INU030	199	6	2.574	0.633	0.611	-0.035
15	INU055	199	6	3.552	0.719	0.718	-0.000
16	LEI004	199	3	2.544	0.608	0.607	-0.002
17	REN105L03	199	8	2.518	0.603	0.603	-0.000
18	REN162C04	199	6	2.846	0.668	0.649	-0.030
19	REN169D01	199	5	4.121	0.789	0.757	-0.042
20	REN169O18	199	6	3.133	0.648	0.681	0.048
21	REN247M23	199	5	2.672	0.573	0.626	0.084
22	REN54P11	199	8	5.495	0.799	0.818	0.023
23	REN64E19	199	9	4.763	0.829	0.790	-0.050
24	VGL0760	199	10	2.676	0.623	0.626	0.005
25	VGL0910	199	8	3.136	0.678	0.681	0.004
26	VGL1063	199	10	1.802	0.432	0.445	0.029
27	VGL1165	199	10	3.694	0.759	0.729	-0.040
28	VGL1828	199	10	4.717	0.769	0.788	0.024
29	VGL2009	199	7	2.486	0.598	0.598	-0.000
30	VGL2409	199	9	4.302	0.749	0.768	0.024
31	VGL2918	199	11	4.749	0.829	0.789	-0.050
32	VGL3008	199	8	4.169	0.769	0.760	-0.011
33	VGL3235	199	8	4.822	0.794	0.793	-0.002

Standard genetic assessment for 7 STRs in the DLA region

Shiba Inu

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	199	11	3.835	0.704	0.739	0.048
2	DLA I-4ACA	199	7	3.207	0.668	0.688	0.029
3	DLA I-4BCT	199	6	2.200	0.568	0.545	-0.041
4	DLA1131	199	9	3.265	0.709	0.694	-0.021
5	5ACA	199	6	3.266	0.698	0.694	-0.007
6	5ACT	199	5	3.367	0.678	0.703	0.035
7	5BCA	199	7	2.806	0.608	0.644	0.055

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Shiba Inu

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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