Statistics and Breed-wide Allele Frequency - Rat Terrier

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #STR typesRat Terrier (n=46)
1002380 365 281 1810.01
1008386 373 289 1820.02
1009382 377 277 1840.04
1011376 365 281 1800.05
1012388 369 289 1880.05
1014375 373 287 1780.01
1016382 371 277 1780.08
1030380 373 293 1780.02
1040380 371 277 1860.16
1046376 379 291 1800.03
1054382 379 277 1840.01
1062382 371 277 1830.07
1068380 373 287 1810.01
1074386 383 289 1860.02
1087380 371 277 1780.11
1092376 379 277 1810.05
1105382 379 277 1780.02
1128384 376 287 1820.03
1200394 367 273 1780.01
1211386 369 277 1830.03
1234380 371 281 1810.01
1252389 371 277 1820.02
1253389 365 289 1820.02
1254388 371 291 1800.01
1255388 371 277 1860.01
1256386 365 281 1800.01
1257384 376 289 1800.04
1258384 373 287 1800.01

DLA Class II Haplotype Frequencies

DLA2 #STR typesRat Terrier (n=46)
2001343 324 2840.01
2002343 327 2800.01
2003343 324 2820.12
2005339 322 2800.07
2009351 324 2800.01
2011345 322 2840.05
2012345 322 2800.01
2014339 322 2840.05
2015339 327 2800.01
2017343 322 2800.02
2021339 324 2680.02
2022339 327 2820.13
2023341 323 2820.02
2025351 321 2800.07
2028345 327 2880.10
2031339 322 2820.13
2035341 323 2800.01
2037341 327 2800.05
2040345 327 2800.01
2043343 324 2960.01
2050341 327 2840.01
2053343 324 2800.01
2079343 323 2780.03
2081343 322 2820.02

Allele Frequencies

#Locus NameAlleleRat Terrier (n=46)
1AHT121 920.10
940.03
960.04
980.18
1000.24
1020.01
1040.16
1060.12
1080.09
1100.02
2AHT137 1310.27
1330.04
1370.12
1390.04
1410.09
1450.12
1470.16
1490.02
1510.13
3AHTH130 1190.12
1210.16
1230.07
1250.07
1270.42
1290.11
1310.03
1330.02
4AHTh171-A 2190.30
2210.10
2230.01
2250.27
2270.04
2330.15
2350.03
2370.09
5AHTh260 2340.01
2380.20
2400.01
2420.05
2440.11
2460.43
2480.12
2500.05
2520.01
6AHTk211 870.38
890.24
910.26
950.03
970.09
7AHTk253 2820.02
2840.01
2860.27
2880.27
2900.29
2920.11
2940.02
8C22.279 1140.02
1160.13
1180.14
1200.21
1220.03
1240.27
1260.20
9FH2001 1280.07
1320.11
1360.03
1400.04
1440.22
1480.32
1520.20
1580.02
10FH2054 1440.09
1480.11
1520.03
1560.37
1600.01
1640.15
1680.05
1720.13
1760.04
1800.01
11FH2848 2280.10
2300.01
2320.02
2340.05
2360.16
2380.21
2400.29
2420.07
2440.09
12INRA21 950.23
970.17
990.12
1010.26
1030.08
1050.14
13INU005 1060.05
1100.12
1220.01
1240.41
1260.17
1300.11
1320.12
14INU030 1440.40
1480.11
1500.39
1520.08
1560.02
15INU055 2040.04
2080.03
2100.52
2120.18
2140.01
2160.01
2180.15
2200.04
16LEI004 850.15
950.71
970.09
1010.01
1070.04
17REN105L03 2270.12
2290.14
2310.16
2330.03
2350.23
2370.04
2390.14
2410.13
18REN162C04 2000.02
2020.14
2040.21
2060.46
2080.05
2100.12
19REN169D01 2020.04
2100.05
2120.24
2140.03
2160.49
2180.05
2200.09
20REN169O18 1620.16
1640.09
1660.28
1680.16
1700.30
21REN247M23 2680.61
2700.03
2720.24
2740.04
2760.08
22REN54P11 2220.15
2260.33
2280.01
2300.02
2320.16
2340.20
2360.09
2380.04
23REN64E19 1390.05
1410.01
1430.03
1450.34
1470.25
1490.01
1510.07
1530.22
1550.02
24VGL0760 120.12
18.20.04
19.20.09
20.20.11
21.20.21
22.20.20
23.20.09
24.20.09
25.20.05
26.20.01
25VGL0910 130.04
15.10.01
160.03
170.01
17.10.13
18.10.05
19.10.47
20.10.17
21.10.03
22.10.01
26.10.03
26VGL1063 80.04
90.07
120.13
130.08
140.25
150.10
170.02
180.01
190.11
200.17
220.02
27VGL1165 170.02
180.10
200.04
210.24
220.13
240.01
250.09
260.07
270.08
280.10
300.01
310.12
28VGL1828 140.07
150.03
160.10
170.16
190.09
200.13
210.07
220.27
230.09
29VGL2009 90.10
100.14
110.03
130.29
140.25
150.16
170.02
30VGL2409 130.01
140.11
150.25
160.14
170.25
180.20
190.04
31VGL2918 120.11
130.29
140.25
150.08
17.30.16
18.30.05
19.30.03
21.30.01
23.30.01
32VGL3008 120.01
150.38
170.15
180.07
190.23
200.08
210.08
230.01
33VGL3235 90.01
110.01
120.02
130.21
140.40
150.05
160.08
170.08
180.14

Standard genetic assessment based on 33 autosomal STR loci

Rat Terrier

  NNaNeHoHeF
Mean467.9394.7220.7480.7660.020
 SE 0.3210.2450.0150.0150.015

Standard genetic assessment based on 7 STRs in the DLA region

Rat Terrier

  NNaNeHoHeF
Mean467.1434.0420.8010.733-0.095
 SE 0.5870.4360.0300.0280.014

Standard genetic assessment for individual STR loci

Rat Terrier

#LocusNNaNeHoHeF
1AHT12146106.5410.8260.8470.025
2AHT1374696.3350.6740.8420.200
3AHTH1304684.1250.8260.758-0.090
4AHTh171-A4684.7660.7830.7900.010
5AHTh2604693.8510.7170.7400.031
6AHTk2114653.5890.6960.7210.036
7AHTk2534674.0540.7830.753-0.039
8C22.2794675.1740.8260.807-0.024
9FH20014684.8920.7830.7960.016
10FH205446104.9440.8480.798-0.063
11FH28484695.5470.8260.820-0.008
12INRA214665.2510.8040.8100.006
13INU0054674.0930.8260.756-0.093
14INU0304653.0040.6520.6670.022
15INU0554682.9890.5870.6650.118
16LEI0044651.8800.5430.468-0.161
17REN105L034686.5410.7610.8470.102
18REN162C044663.4630.8480.711-0.192
19REN169D014673.1960.6300.6870.083
20REN169O184654.2880.5870.7670.235
21REN247M234652.2910.5650.564-0.003
22REN54P114684.8920.7170.7960.098
23REN64E194694.3050.7610.7680.009
24VGL076046107.4250.8040.8650.070
25VGL091046113.6480.7170.7260.012
26VGL106346116.9380.8910.856-0.041
27VGL116546127.8230.8040.8720.078
28VGL18284696.5920.8260.8480.026
29VGL20094674.8480.7610.7940.041
30VGL24094675.0740.8040.803-0.002
31VGL29184695.0740.7170.8030.107
32VGL30084684.2360.7170.7640.061
33VGL32354694.1740.7610.760-0.001

Standard genetic assessment for 7 STRs in the DLA region

Rat Terrier

#LocusNNaNeHoHeF
1DLA I-3CCA4695.0870.8910.803-0.109
2DLA I-4ACA4693.7890.8260.736-0.122
3DLA I-4BCT4672.4310.6740.589-0.145
4DLA11314686.2510.9130.840-0.087
55ACA4653.6580.7610.727-0.047
65ACT4653.6020.8040.722-0.114
75BCA4673.4750.7390.712-0.038