Statistics and Breed-wide Allele Frequency - Havana Silk

Updated Jul 6, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Havana Silk (n=64)
1003	387 375 277 186	0.063
1006	387 375 293 180	0.055
1016	382 371 277 178	0.109
1018	375 373 287 186	0.008
1029	380 365 281 182	0.008
1030	380 373 293 178	0.078
1040	380 371 277 186	0.016
1054	382 379 277 184	0.055
1068	380 373 287 181	0.211
1092	376 379 277 181	0.180
1093	386 379 277 180	0.023
1115	386 371 277 182	0.047
1116	380 365 289 186	0.047
1117	376 373 277 180	0.063
1140	376 379 301 180	0.016
1262	382 377 289 180	0.023

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Havana Silk (n=64)
2001	343 324 284	0.063
2003	343 324 282	0.234
2005	339 322 280	0.023
2007	351 327 280	0.055
2016	339 323 284	0.016
2022	339 327 282	0.055
2023	341 323 282	0.078
2032	339 323 280	0.023
2053	343 324 280	0.227
2066	339 324 280	0.109
2070	347 324 282	0.047
2074	341 324 284	0.063
2075	341 327 282	0.008

Allele Frequencies

#	Locus Name	Allele	Havana Silk (n=64)
1	AHT121	92	0.109
		94	0.047
		96	0.031
		100	0.148
		102	0.102
		104	0.219
		106	0.086
		108	0.258
2	AHT137	131	0.227
		133	0.016
		137	0.133
		141	0.438
		143	0.023
		147	0.141
		149	0.023
3	AHTH130	119	0.258
		121	0.141
		125	0.320
		127	0.203
		129	0.055
		131	0.023
4	AHTh171-A	219	0.156
		225	0.141
		227	0.086
		229	0.313
		231	0.273
		233	0.023
		235	0.008
5	AHTh260	238	0.047
		244	0.125
		246	0.242
		248	0.367
		250	0.063
		254	0.156
6	AHTk211	87	0.430
		89	0.219
		91	0.008
		95	0.344
7	AHTk253	286	0.070
		288	0.578
		290	0.047
		292	0.305
8	C22.279	116	0.070
		118	0.328
		120	0.008
		124	0.273
		126	0.117
		130	0.203
9	FH2001	124	0.039
		132	0.703
		144	0.227
		148	0.008
		152	0.023
10	FH2054	152	0.039
		156	0.344
		160	0.023
		164	0.188
		168	0.234
		172	0.055
		176	0.117
11	FH2848	232	0.234
		236	0.305
		238	0.047
		240	0.156
		242	0.258
12	INRA21	91	0.063
		95	0.266
		97	0.430
		99	0.039
		101	0.164
		103	0.039
13	INU005	124	0.664
		126	0.156
		128	0.016
		132	0.063
		138	0.102
14	INU030	144	0.633
		148	0.008
		150	0.063
		152	0.297
15	INU055	210	0.359
		212	0.305
		214	0.180
		216	0.031
		218	0.125
16	LEI004	85	0.898
		95	0.039
		97	0.031
		107	0.031
17	REN105L03	227	0.008
		229	0.023
		231	0.320
		233	0.133
		237	0.180
		241	0.336
18	REN162C04	202	0.070
		204	0.070
		206	0.492
		208	0.297
		210	0.070
19	REN169D01	202	0.070
		210	0.320
		212	0.023
		214	0.078
		216	0.289
		218	0.055
		220	0.164
20	REN169O18	160	0.070
		162	0.555
		164	0.148
		166	0.055
		168	0.063
		170	0.109
21	REN247M23	268	0.227
		270	0.227
		272	0.305
		274	0.023
		276	0.195
		278	0.023
22	REN54P11	222	0.172
		226	0.164
		228	0.094
		232	0.172
		236	0.234
		238	0.164
23	REN64E19	139	0.055
		143	0.039
		145	0.031
		147	0.313
		149	0.172
		153	0.352
		155	0.039
24	VGL0760	12	0.031
		13	0.078
		14	0.055
		18.2	0.094
		20.2	0.016
		21.2	0.094
		22.2	0.328
		23.2	0.227
		24.2	0.078
25	VGL0910	16.1	0.125
		17.1	0.328
		18	0.008
		18.1	0.094
		19.1	0.125
		20.1	0.016
		21.1	0.195
		22	0.047
		22.1	0.047
		23.1	0.016
26	VGL1063	8	0.125
		12	0.055
		13	0.023
		14	0.117
		15	0.063
		16	0.008
		17	0.133
		18	0.047
		19	0.047
		20	0.211
		21	0.078
		22	0.094
27	VGL1165	18	0.172
		19	0.141
		21	0.125
		22	0.008
		26	0.305
		27	0.078
		28	0.102
		29	0.039
		31	0.008
		32	0.023
28	VGL1828	15	0.070
		16	0.453
		19	0.039
		20	0.133
		21	0.289
		23	0.016
29	VGL2009	11	0.273
		12	0.039
		13	0.188
		14	0.281
		15	0.203
		16	0.016
30	VGL2409	14	0.016
		16	0.320
		17	0.352
		18	0.273
		20	0.039
31	VGL2918	12	0.086
		13	0.578
		14	0.133
		15	0.023
		16	0.063
		18.3	0.023
		19.3	0.023
		22.3	0.070
32	VGL3008	13	0.094
		15	0.016
		16	0.008
		17	0.039
		18	0.180
		19	0.234
		20	0.023
		21	0.359
		22	0.047
33	VGL3235	13	0.531
		14	0.117
		15	0.117
		16	0.008
		17	0.008
		18	0.141
		19	0.078

Standard genetic assessment based on 33 autosomal STR loci

Havana Silk

		N	Na	Ne	Ho	He	F
	Mean	64	6.485	3.866	0.736	0.701	-0.047
	SE		0.324	0.242	0.026	0.023	0.012

Standard genetic assessment based on 7 STRs in the DLA region

Havana Silk

		N	Na	Ne	Ho	He	F
	Mean	64	5.143	3.125	0.696	0.651	-0.062
	SE		0.425	0.321	0.061	0.042	0.051

Standard genetic assessment for individual STR loci

Havana Silk

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	64	8	5.911	0.813	0.831	0.022
2	AHT137	64	7	3.552	0.844	0.719	-0.174
3	AHTH130	64	6	4.280	0.750	0.766	0.021
4	AHTh171-A	64	7	4.452	0.766	0.775	0.013
5	AHTh260	64	6	4.173	0.797	0.760	-0.048
6	AHTk211	64	4	2.851	0.719	0.649	-0.107
7	AHTk253	64	4	2.303	0.516	0.566	0.089
8	C22.279	64	6	4.125	0.859	0.758	-0.134
9	FH2001	64	5	1.825	0.438	0.452	0.032
10	FH2054	64	7	4.404	0.891	0.773	-0.152
11	FH2848	64	5	4.152	0.766	0.759	-0.009
12	INRA21	64	6	3.459	0.734	0.711	-0.033
13	INU005	64	5	2.084	0.563	0.520	-0.081
14	INU030	64	4	2.030	0.563	0.507	-0.108
15	INU055	64	5	3.692	0.813	0.729	-0.114
16	LEI004	64	4	1.234	0.188	0.189	0.010
17	REN105L03	64	6	3.760	0.828	0.734	-0.128
18	REN162C04	64	5	2.897	0.641	0.655	0.022
19	REN169D01	64	7	4.392	0.828	0.772	-0.072
20	REN169O18	64	6	2.829	0.594	0.646	0.082
21	REN247M23	64	6	4.260	0.844	0.765	-0.103
22	REN54P11	64	6	5.661	0.844	0.823	-0.025
23	REN64E19	64	7	3.879	0.750	0.742	-0.011
24	VGL0760	64	9	5.182	0.875	0.807	-0.084
25	VGL0910	64	10	5.241	0.813	0.809	-0.004
26	VGL1063	64	12	8.454	0.938	0.882	-0.063
27	VGL1165	64	10	5.669	0.906	0.824	-0.100
28	VGL1828	64	6	3.193	0.750	0.687	-0.092
29	VGL2009	64	6	4.309	0.813	0.768	-0.058
30	VGL2409	64	5	3.303	0.734	0.697	-0.053
31	VGL2918	64	8	2.705	0.719	0.630	-0.140
32	VGL3008	64	9	4.353	0.688	0.770	0.107
33	VGL3235	64	7	2.979	0.703	0.664	-0.058

Standard genetic assessment for 7 STRs in the DLA region

Havana Silk

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	64	6	4.008	0.906	0.750	-0.208
2	DLA I-4ACA	64	6	3.988	0.859	0.749	-0.147
3	DLA I-4BCT	64	6	2.643	0.625	0.622	-0.005
4	DLA1131	64	6	4.104	0.703	0.756	0.070
5	5ACA	64	5	2.837	0.609	0.647	0.059
6	5ACT	64	4	1.728	0.391	0.421	0.072
7	5BCA	64	3	2.570	0.781	0.611	-0.279

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Havana Silk

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Havana Silk

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Connect with us on social media