Statistics and Breed-wide Allele Frequency - German Shepherd

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	German Shepherd (n=50)
1006	387 375 293 180	0.050
1045	376 371 277 186	0.030
1052	380 372 289 184	0.520
1054	382 379 277 184	0.050
1068	380 373 287 181	0.280
1091	381 371 277 181	0.010
1165	392 369 281 182	0.010
1166	388 379 277 184	0.050

DLA Class II Haplotype Frequencies

DLA2 #	STR types	German Shepherd (n=50)
2002	343 327 280	0.010
2003	343 324 282	0.010
2007	351 327 280	0.050
2017	343 322 280	0.470
2022	339 327 282	0.100
2039	345 327 276	0.030
2053	343 324 280	0.270
2067	343 322 284	0.040
2080	339 325 276	0.020

Allele Frequencies

#	Locus Name	Allele	German Shepherd (n=50)
1	AHT121	80	0.020
		88	0.010
		94	0.050
		100	0.190
		102	0.590
		104	0.090
		106	0.010
		108	0.020
		112	0.020
2	AHT137	131	0.370
		133	0.040
		135	0.010
		137	0.510
		141	0.010
		147	0.010
		151	0.030
		155	0.020
3	AHTH130	123	0.110
		125	0.030
		127	0.380
		129	0.040
		131	0.440
4	AHTh171-A	219	0.090
		223	0.440
		225	0.030
		233	0.440
5	AHTh260	238	0.370
		242	0.260
		244	0.020
		246	0.160
		248	0.030
		252	0.150
		254	0.010
6	AHTk211	87	0.250
		89	0.350
		91	0.120
		95	0.280
7	AHTk253	280	0.010
		286	0.080
		288	0.710
		290	0.070
		292	0.020
		294	0.110
8	C22.279	116	0.410
		118	0.120
		120	0.010
		122	0.010
		124	0.030
		126	0.420
9	FH2001	132	0.300
		140	0.010
		144	0.360
		148	0.310
		152	0.020
10	FH2054	152	0.380
		156	0.070
		160	0.060
		164	0.150
		168	0.310
		172	0.030
11	FH2848	232	0.030
		236	0.030
		238	0.050
		240	0.420
		242	0.440
		244	0.030
12	INRA21	91	0.070
		95	0.570
		97	0.050
		99	0.190
		101	0.120
13	INU005	110	0.190
		124	0.290
		126	0.500
		128	0.020
14	INU030	144	0.020
		146	0.400
		150	0.530
		152	0.050
15	INU055	210	0.210
		214	0.060
		218	0.460
		220	0.270
16	LEI004	85	0.500
		95	0.440
		103	0.020
		107	0.040
17	REN105L03	227	0.420
		229	0.010
		231	0.190
		233	0.080
		235	0.120
		241	0.180
18	REN162C04	200	0.090
		204	0.090
		206	0.410
		208	0.040
		212	0.370
19	REN169D01	212	0.390
		216	0.570
		218	0.010
		220	0.030
20	REN169O18	158	0.060
		162	0.240
		164	0.170
		166	0.150
		168	0.340
		172	0.010
		174	0.010
		178	0.020
21	REN247M23	268	0.160
		270	0.750
		272	0.010
		278	0.080
22	REN54P11	226	0.420
		232	0.070
		234	0.440
		236	0.010
		238	0.060
23	REN64E19	139	0.020
		143	0.040
		145	0.020
		147	0.070
		153	0.200
		155	0.650
24	VGL0760	12	0.140
		13	0.330
		14	0.010
		18.2	0.050
		19.2	0.020
		20	0.010
		20.2	0.100
		21.2	0.220
		22.2	0.110
		23.2	0.010
25	VGL0910	16.1	0.010
		17.1	0.280
		18.1	0.060
		19.1	0.320
		20.1	0.130
		21.1	0.160
		22.1	0.040
26	VGL1063	8	0.010
		9	0.020
		10	0.130
		11	0.040
		12	0.410
		13	0.290
		14	0.070
		18	0.010
		19	0.010
		20	0.010
27	VGL1165	14	0.010
		15	0.190
		16	0.050
		17	0.210
		18	0.010
		21	0.010
		22	0.060
		23	0.010
		25	0.040
		26	0.240
		27	0.100
		28	0.070
28	VGL1828	15	0.050
		16	0.040
		17	0.040
		19	0.830
		20	0.010
		22	0.030
29	VGL2009	9	0.030
		11	0.280
		13	0.210
		14	0.200
		15	0.270
		16	0.010
30	VGL2409	15	0.300
		16	0.240
		17	0.170
		18	0.200
		19	0.090
31	VGL2918	12	0.020
		13	0.110
		14	0.190
		15	0.200
		16.3	0.010
		18.3	0.020
		19.3	0.070
		20.3	0.050
		21.3	0.250
		22.3	0.080
32	VGL3008	10	0.040
		13	0.010
		15	0.610
		16	0.020
		17	0.040
		18	0.190
		19	0.080
		20	0.010
33	VGL3235	13	0.010
		14	0.450
		15	0.380
		16	0.130
		17	0.010
		19	0.020

Standard genetic assessment based on 33 autosomal STR loci

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	50	6.212	3.186	0.638	0.648	0.016
	SE		0.363	0.197	0.022	0.021	0.014

Standard genetic assessment based on 7 STRs in the DLA region

German Shepherd

		N	Na	Ne	Ho	He	F
	Mean	50	5.000	2.117	0.494	0.494	0.015
	SE		0.404	0.206	0.060	0.050	0.032

Standard genetic assessment for individual STR loci

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	50	9	2.524	0.600	0.604	0.006
2	AHT137	50	8	2.499	0.600	0.600	-0.000
3	AHTH130	50	5	2.836	0.700	0.647	-0.081
4	AHTh171-A	50	4	2.524	0.600	0.604	0.006
5	AHTh260	50	7	3.937	0.700	0.746	0.062
6	AHTk211	50	4	3.600	0.680	0.722	0.058
7	AHTk253	50	6	1.894	0.480	0.472	-0.017
8	C22.279	50	6	2.778	0.560	0.640	0.125
9	FH2001	50	5	3.163	0.660	0.684	0.035
10	FH2054	50	6	3.671	0.800	0.728	-0.100
11	FH2848	50	6	2.665	0.720	0.625	-0.152
12	INRA21	50	5	2.612	0.620	0.617	-0.005
13	INU005	50	4	2.698	0.660	0.629	-0.049
14	INU030	50	4	2.253	0.540	0.556	0.029
15	INU055	50	4	3.010	0.600	0.668	0.102
16	LEI004	50	4	2.244	0.540	0.554	0.026
17	REN105L03	50	6	3.762	0.660	0.734	0.101
18	REN162C04	50	5	3.098	0.720	0.677	-0.063
19	REN169D01	50	4	2.092	0.440	0.522	0.157
20	REN169O18	50	8	4.371	0.780	0.771	-0.011
21	REN247M23	50	4	1.682	0.360	0.405	0.112
22	REN54P11	50	5	2.641	0.660	0.621	-0.062
23	REN64E19	50	6	2.129	0.480	0.530	0.095
24	VGL0760	50	10	4.946	0.740	0.798	0.072
25	VGL0910	50	7	4.374	0.680	0.771	0.118
26	VGL1063	50	10	3.618	0.700	0.724	0.033
27	VGL1165	50	12	6.219	0.880	0.839	-0.049
28	VGL1828	50	6	1.438	0.340	0.304	-0.117
29	VGL2009	50	6	4.230	0.680	0.764	0.109
30	VGL2409	50	5	4.452	0.800	0.775	-0.032
31	VGL2918	50	10	6.046	0.860	0.835	-0.030
32	VGL3008	50	8	2.390	0.520	0.582	0.106
33	VGL3235	50	6	2.744	0.680	0.636	-0.070

Standard genetic assessment for 7 STRs in the DLA region

German Shepherd

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	50	7	1.542	0.340	0.351	0.032
2	DLA I-4ACA	50	6	2.755	0.640	0.637	-0.005
3	DLA I-4BCT	50	5	2.695	0.640	0.629	-0.017
4	DLA1131	50	5	2.119	0.580	0.528	-0.098
5	5ACA	50	4	1.520	0.320	0.342	0.065
6	5ACT	50	4	2.667	0.660	0.625	-0.056
7	5BCA	50	4	1.524	0.280	0.344	0.186

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - German Shepherd

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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