Statistics and Breed-wide Allele Frequency - Border Collie

Updated Jul 19, 2026

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=89)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.056
1012	388 369 289 188	0.051
1014	375 373 287 178	0.067
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.135
1052	380 372 289 184	0.011
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.213
1092	376 379 277 181	0.011
1104	386 373 289 186	0.157
1132	376 379 277 184	0.006
1222	386 379 277 181	0.017
1236	376 379 289 181	0.230
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=89)
2001	343 324 284	0.135
2002	343 327 280	0.152
2003	343 324 282	0.056
2005	339 322 280	0.011
2017	343 322 280	0.174
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.011
2037	341 327 280	0.067
2039	345 327 276	0.118
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.079
2065	339 325 286	0.011
2067	343 322 284	0.079
2075	341 327 282	0.011
2096	351 322 280	0.028
2125	351 322 286	0.028
2141	343 331 280	0.006
2142	345 333 276	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=96)
1	AHT121	92	0.064
		94	0.101
		98	0.053
		100	0.112
		102	0.207
		104	0.037
		106	0.239
		108	0.144
		110	0.016
		112	0.027
2	AHT137	131	0.242
		137	0.058
		141	0.021
		143	0.005
		145	0.389
		147	0.058
		149	0.111
		151	0.021
		153	0.095
3	AHTH130	117	0.005
		119	0.026
		121	0.353
		123	0.011
		125	0.026
		127	0.111
		129	0.053
		131	0.232
		133	0.063
		135	0.121
4	AHTh171-A	219	0.021
		221	0.016
		225	0.122
		227	0.011
		229	0.117
		231	0.005
		233	0.447
		235	0.027
		237	0.229
		241	0.005
5	AHTh260	238	0.141
		240	0.250
		242	0.147
		244	0.011
		246	0.402
		248	0.038
		252	0.005
		254	0.005
6	AHTk211	87	0.112
		89	0.096
		91	0.729
		93	0.016
		95	0.011
		97	0.037
7	AHTk253	284	0.112
		286	0.085
		288	0.388
		290	0.011
		292	0.404
8	C22.279	114	0.043
		116	0.223
		118	0.628
		120	0.011
		124	0.064
		126	0.021
		128	0.011
9	FH2001	128	0.053
		132	0.415
		136	0.048
		140	0.016
		144	0.404
		148	0.064
10	FH2054	144	0.005
		148	0.101
		152	0.436
		156	0.128
		160	0.229
		164	0.037
		168	0.053
		172	0.005
		176	0.005
11	FH2848	232	0.027
		234	0.141
		236	0.022
		238	0.092
		240	0.217
		242	0.266
		244	0.234
12	INRA21	91	0.094
		95	0.729
		97	0.073
		101	0.089
		103	0.010
		105	0.005
13	INU005	110	0.128
		120	0.011
		122	0.005
		124	0.335
		126	0.096
		128	0.016
		130	0.005
		132	0.404
14	INU030	144	0.226
		148	0.037
		150	0.342
		152	0.274
		154	0.116
		156	0.005
15	INU055	208	0.156
		210	0.750
		212	0.021
		214	0.021
		216	0.031
		218	0.021
16	LEI004	85	0.255
		95	0.559
		105	0.005
		107	0.160
		111	0.021
17	REN105L03	227	0.038
		231	0.038
		233	0.283
		235	0.120
		237	0.071
		239	0.163
		241	0.283
		245	0.005
18	REN162C04	200	0.106
		202	0.388
		204	0.282
		206	0.069
		208	0.149
		212	0.005
19	REN169D01	202	0.130
		210	0.147
		212	0.092
		214	0.011
		216	0.451
		218	0.147
		220	0.016
		224	0.005
20	REN169O18	160	0.022
		162	0.065
		164	0.091
		166	0.016
		168	0.500
		170	0.306
21	REN247M23	266	0.152
		268	0.217
		270	0.196
		272	0.217
		276	0.076
		278	0.141
22	REN54P11	222	0.011
		226	0.186
		228	0.037
		232	0.452
		234	0.117
		236	0.176
		238	0.021
23	REN64E19	139	0.016
		143	0.026
		145	0.438
		147	0.234
		149	0.177
		153	0.109
24	VGL0760	12	0.048
		14	0.271
		15	0.021
		18.2	0.053
		20.2	0.149
		21.2	0.346
		22.2	0.016
		23.2	0.090
		24.2	0.005
25	VGL0910	14	0.005
		16.1	0.026
		17.1	0.458
		18.1	0.137
		19.1	0.205
		20.1	0.068
		21.1	0.032
		22.1	0.053
		23.1	0.011
		24.1	0.005
26	VGL1063	8	0.047
		9	0.616
		11	0.005
		12	0.042
		13	0.037
		14	0.089
		15	0.095
		17	0.011
		18	0.005
		19	0.011
		20	0.026
		21	0.011
		22	0.005
27	VGL1165	14	0.011
		15	0.005
		17	0.011
		18	0.005
		20	0.342
		21	0.195
		22	0.016
		23	0.005
		24	0.005
		25	0.011
		26	0.116
		27	0.047
		28	0.100
		29	0.026
		30	0.100
		31	0.005
28	VGL1828	15	0.126
		16	0.095
		17	0.316
		19	0.079
		20	0.032
		21	0.216
		22	0.132
		26	0.005
29	VGL2009	9	0.384
		10	0.026
		11	0.032
		12	0.016
		13	0.200
		14	0.079
		15	0.242
		16	0.021
30	VGL2409	13	0.068
		14	0.374
		15	0.042
		16	0.037
		17	0.332
		18	0.084
		19	0.042
		20	0.021
31	VGL2918	12	0.232
		13	0.153
		14	0.242
		15	0.121
		16	0.016
		17.3	0.137
		18.3	0.084
		19.3	0.005
		20.3	0.005
		22.3	0.005
32	VGL3008	10	0.016
		14	0.058
		15	0.084
		16	0.274
		17	0.147
		18	0.189
		19	0.047
		20	0.105
		21	0.005
		22	0.058
		23	0.011
		24	0.005
33	VGL3235	12	0.168
		13	0.021
		14	0.274
		15	0.068
		16	0.111
		17	0.084
		18	0.268
		19	0.005

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	96	8.091	3.853	0.687	0.708	0.029
	SE		0.412	0.214	0.020	0.019	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	96	6.286	2.986	0.669	0.657	-0.019
	SE		0.389	0.151	0.022	0.023	0.013

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	96	10	6.540	0.819	0.847	0.033
2	AHT137	96	9	4.182	0.695	0.761	0.087
3	AHTH130	96	10	4.692	0.789	0.787	-0.003
4	AHTh171-A	96	10	3.544	0.723	0.718	-0.008
5	AHTh260	96	8	3.740	0.739	0.733	-0.009
6	AHTk211	96	6	1.804	0.383	0.446	0.140
7	AHTk253	96	5	2.994	0.660	0.666	0.010
8	C22.279	96	7	2.220	0.564	0.550	-0.026
9	FH2001	96	6	2.898	0.606	0.655	0.074
10	FH2054	96	9	3.658	0.670	0.727	0.078
11	FH2848	96	7	4.938	0.815	0.797	-0.022
12	INRA21	96	6	1.806	0.417	0.446	0.066
13	INU005	96	8	3.316	0.681	0.698	0.025
14	INU030	96	6	3.877	0.779	0.742	-0.050
15	INU055	96	6	1.697	0.448	0.411	-0.090
16	LEI004	96	5	2.481	0.617	0.597	-0.034
17	REN105L03	96	8	4.795	0.707	0.791	0.107
18	REN162C04	96	6	3.724	0.649	0.731	0.113
19	REN169D01	96	8	3.670	0.739	0.727	-0.016
20	REN169O18	96	6	2.800	0.624	0.643	0.030
21	REN247M23	96	6	5.503	0.859	0.818	-0.049
22	REN54P11	96	7	3.502	0.702	0.714	0.017
23	REN64E19	96	6	3.441	0.719	0.709	-0.013
24	VGL0760	96	9	4.360	0.766	0.771	0.006
25	VGL0910	96	10	3.574	0.737	0.720	-0.023
26	VGL1063	96	13	2.483	0.547	0.597	0.084
27	VGL1165	96	16	5.208	0.768	0.808	0.049
28	VGL1828	96	8	5.108	0.695	0.804	0.136
29	VGL2009	96	8	3.924	0.663	0.745	0.110
30	VGL2409	96	8	3.749	0.758	0.733	-0.034
31	VGL2918	96	10	5.671	0.747	0.824	0.093
32	VGL3008	96	12	6.248	0.832	0.840	0.010
33	VGL3235	96	8	5.006	0.747	0.800	0.066

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	96	6	3.280	0.725	0.695	-0.043
2	DLA I-4ACA	96	7	3.270	0.734	0.694	-0.057
3	DLA I-4BCT	96	6	3.114	0.695	0.679	-0.023
4	DLA1131	96	7	3.055	0.649	0.673	0.035
5	5ACA	96	5	2.055	0.543	0.513	-0.058
6	5ACT	96	8	3.214	0.670	0.689	0.027
7	5BCA	96	5	2.914	0.663	0.657	-0.010

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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