Statistics and Breed-wide Allele Frequency - Border Collie

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Border Collie (n=80)
1008	386 373 289 182	0.006
1011	376 365 281 180	0.063
1012	388 369 289 188	0.050
1014	375 373 287 178	0.069
1029	380 365 281 182	0.006
1030	380 373 293 178	0.006
1045	376 371 277 186	0.144
1052	380 372 289 184	0.013
1063	382 373 289 182	0.006
1066	376 375 277 178	0.006
1068	380 373 287 181	0.206
1092	376 379 277 181	0.006
1104	386 373 289 186	0.169
1222	386 379 277 181	0.013
1236	376 379 289 181	0.219
1237	376 379 277 178	0.006
1238	376 371 277 184	0.006
1239	376 371 277 181	0.006

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Border Collie (n=80)
2001	343 324 284	0.138
2002	343 327 280	0.162
2003	343 324 282	0.050
2005	339 322 280	0.013
2017	343 322 280	0.175
2022	339 327 282	0.006
2023	341 323 282	0.006
2031	339 322 282	0.006
2033	339 323 282	0.006
2037	341 327 280	0.069
2039	345 327 276	0.131
2040	345 327 280	0.006
2052	345 321 280	0.006
2053	343 324 280	0.069
2065	339 325 286	0.006
2067	343 322 284	0.069
2075	341 327 282	0.013
2096	351 322 280	0.031
2125	351 322 286	0.031
2141	343 331 280	0.006

Allele Frequencies

#	Locus Name	Allele	Border Collie (n=85)
1	AHT121	92	0.071
		94	0.101
		98	0.054
		100	0.107
		102	0.214
		104	0.042
		106	0.244
		108	0.125
		110	0.018
		112	0.024
2	AHT137	131	0.247
		137	0.059
		141	0.018
		143	0.006
		145	0.406
		147	0.065
		149	0.100
		151	0.012
		153	0.088
3	AHTH130	117	0.006
		119	0.024
		121	0.335
		123	0.006
		125	0.024
		127	0.112
		129	0.053
		131	0.241
		133	0.065
		135	0.135
4	AHTh171-A	219	0.018
		221	0.012
		225	0.125
		227	0.012
		229	0.119
		231	0.006
		233	0.440
		235	0.030
		237	0.232
		241	0.006
5	AHTh260	238	0.140
		240	0.238
		242	0.146
		244	0.012
		246	0.409
		248	0.043
		252	0.006
		254	0.006
6	AHTk211	87	0.113
		89	0.095
		91	0.732
		93	0.018
		95	0.012
		97	0.030
7	AHTk253	284	0.113
		286	0.083
		288	0.387
		290	0.012
		292	0.405
8	C22.279	114	0.048
		116	0.244
		118	0.607
		120	0.012
		124	0.060
		126	0.018
		128	0.012
9	FH2001	128	0.054
		132	0.411
		136	0.048
		140	0.012
		144	0.411
		148	0.065
10	FH2054	144	0.006
		148	0.101
		152	0.440
		156	0.119
		160	0.238
		164	0.036
		168	0.048
		172	0.006
		176	0.006
11	FH2848	232	0.024
		234	0.152
		236	0.018
		238	0.091
		240	0.220
		242	0.268
		244	0.226
12	INRA21	91	0.094
		95	0.747
		97	0.076
		101	0.076
		103	0.006
13	INU005	110	0.113
		120	0.006
		122	0.006
		124	0.339
		126	0.101
		128	0.018
		130	0.006
		132	0.411
14	INU030	144	0.208
		148	0.036
		150	0.351
		152	0.292
		154	0.107
		156	0.006
15	INU055	208	0.171
		210	0.735
		212	0.024
		214	0.018
		216	0.029
		218	0.024
16	LEI004	85	0.238
		95	0.565
		107	0.173
		111	0.024
17	REN105L03	227	0.037
		231	0.037
		233	0.287
		235	0.128
		237	0.061
		239	0.159
		241	0.287
		245	0.006
18	REN162C04	200	0.107
		202	0.399
		204	0.274
		206	0.071
		208	0.149
19	REN169D01	202	0.140
		210	0.128
		212	0.091
		214	0.006
		216	0.457
		218	0.152
		220	0.018
		224	0.006
20	REN169O18	160	0.018
		162	0.060
		164	0.096
		166	0.018
		168	0.500
		170	0.307
21	REN247M23	266	0.159
		268	0.220
		270	0.201
		272	0.207
		276	0.067
		278	0.146
22	REN54P11	222	0.012
		226	0.185
		228	0.036
		232	0.464
		234	0.125
		236	0.155
		238	0.024
23	REN64E19	139	0.012
		143	0.024
		145	0.435
		147	0.241
		149	0.171
		153	0.118
24	VGL0760	12	0.054
		14	0.268
		15	0.024
		18.2	0.048
		20.2	0.149
		21.2	0.357
		22.2	0.018
		23.2	0.077
		24.2	0.006
25	VGL0910	16.1	0.030
		17.1	0.458
		18.1	0.143
		19.1	0.202
		20.1	0.077
		21.1	0.024
		22.1	0.054
		23.1	0.006
		24.1	0.006
26	VGL1063	8	0.042
		9	0.619
		11	0.006
		12	0.036
		13	0.042
		14	0.101
		15	0.083
		17	0.012
		18	0.006
		19	0.006
		20	0.030
		21	0.012
		22	0.006
27	VGL1165	14	0.012
		15	0.006
		17	0.012
		18	0.006
		20	0.333
		21	0.196
		22	0.012
		23	0.006
		24	0.006
		25	0.012
		26	0.113
		27	0.054
		28	0.113
		29	0.024
		30	0.089
		31	0.006
28	VGL1828	15	0.125
		16	0.095
		17	0.298
		19	0.083
		20	0.030
		21	0.220
		22	0.149
29	VGL2009	9	0.417
		10	0.030
		11	0.018
		12	0.018
		13	0.190
		14	0.065
		15	0.256
		16	0.006
30	VGL2409	13	0.060
		14	0.399
		15	0.042
		16	0.030
		17	0.321
		18	0.089
		19	0.036
		20	0.024
31	VGL2918	12	0.250
		13	0.149
		14	0.214
		15	0.119
		16	0.018
		17.3	0.155
		18.3	0.083
		19.3	0.006
		20.3	0.006
32	VGL3008	10	0.012
		14	0.060
		15	0.077
		16	0.274
		17	0.143
		18	0.196
		19	0.048
		20	0.107
		21	0.006
		22	0.060
		23	0.012
		24	0.006
33	VGL3235	12	0.155
		13	0.018
		14	0.268
		15	0.077
		16	0.125
		17	0.083
		18	0.268
		19	0.006

Standard genetic assessment based on 33 autosomal STR loci

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	85	7.909	3.822	0.682	0.705	0.033
	SE		0.425	0.216	0.019	0.019	0.011

Standard genetic assessment based on 7 STRs in the DLA region

Border Collie

		N	Na	Ne	Ho	He	F
	Mean	85	6.143	2.980	0.666	0.657	-0.014
	SE		0.315	0.145	0.023	0.021	0.016

Standard genetic assessment for individual STR loci

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	85	10	6.518	0.810	0.847	0.044
2	AHT137	85	9	3.973	0.706	0.748	0.057
3	AHTH130	85	10	4.772	0.788	0.790	0.003
4	AHTh171-A	85	10	3.581	0.726	0.721	-0.008
5	AHTh260	85	8	3.751	0.720	0.733	0.019
6	AHTk211	85	6	1.788	0.369	0.441	0.163
7	AHTk253	85	5	2.999	0.667	0.667	-0.000
8	C22.279	85	7	2.301	0.583	0.565	-0.032
9	FH2001	85	6	2.882	0.619	0.653	0.052
10	FH2054	85	9	3.587	0.655	0.721	0.092
11	FH2848	85	7	4.912	0.841	0.796	-0.057
12	INRA21	85	5	1.728	0.400	0.421	0.051
13	INU005	85	8	3.255	0.667	0.693	0.038
14	INU030	85	6	3.779	0.786	0.735	-0.068
15	INU055	85	6	1.748	0.471	0.428	-0.100
16	LEI004	85	4	2.458	0.619	0.593	-0.044
17	REN105L03	85	8	4.712	0.683	0.788	0.133
18	REN162C04	85	5	3.666	0.643	0.727	0.116
19	REN169D01	85	8	3.607	0.744	0.723	-0.029
20	REN169O18	85	6	2.794	0.602	0.642	0.062
21	REN247M23	85	6	5.473	0.854	0.817	-0.044
22	REN54P11	85	7	3.434	0.679	0.709	0.043
23	REN64E19	85	6	3.433	0.706	0.709	0.004
24	VGL0760	85	9	4.283	0.750	0.767	0.022
25	VGL0910	85	9	3.548	0.714	0.718	0.005
26	VGL1063	85	13	2.460	0.548	0.594	0.077
27	VGL1165	85	16	5.335	0.774	0.813	0.048
28	VGL1828	85	7	5.215	0.690	0.808	0.146
29	VGL2009	85	8	3.556	0.643	0.719	0.106
30	VGL2409	85	8	3.593	0.738	0.722	-0.023
31	VGL2918	85	9	5.681	0.738	0.824	0.104
32	VGL3008	85	12	6.206	0.821	0.839	0.021
33	VGL3235	85	8	5.093	0.738	0.804	0.082

Standard genetic assessment for 7 STRs in the DLA region

Border Collie

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	85	6	3.278	0.716	0.695	-0.030
2	DLA I-4ACA	85	7	3.268	0.738	0.694	-0.064
3	DLA I-4BCT	85	6	3.129	0.714	0.680	-0.050
4	DLA1131	85	7	3.139	0.655	0.681	0.039
5	5ACA	85	5	2.095	0.549	0.523	-0.050
6	5ACT	85	7	3.083	0.643	0.676	0.049
7	5BCA	85	5	2.867	0.646	0.651	0.007

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Border Collie

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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