Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

Updated Dec 22, 2024

DLA Class I Haplotype Frequencies

DLA1 #	STR types	Bernese Mountain Dog (n=184)
1006	387 375 293 180	0.073
1016	382 371 277 178	0.043
1030	380 373 293 178	0.014
1068	380 373 287 181	0.071
1094	395 375 277 176	0.122
1121	380 371 277 183	0.098
1160	386 369 289 176	0.557
1221	380 365 293 180	0.014
1256	386 365 281 180	0.003
1267	386 375 277 176	0.003
1292	386 369 289 178	0.003

DLA Class II Haplotype Frequencies

DLA2 #	STR types	Bernese Mountain Dog (n=184)
2001	343 324 284	0.014
2005	339 322 280	0.125
2007	351 327 280	0.079
2012	345 322 280	0.003
2021	339 324 268	0.043
2024	343 323 280	0.552
2053	343 324 280	0.071
2071	339 322 286	0.098
2118	347 327 280	0.014
2134	343 323 268	0.003

Allele Frequencies

#	Locus Name	Allele	Bernese Mountain Dog (n=187)
1	AHT121	80	0.003
		96	0.045
		98	0.561
		100	0.102
		102	0.243
		104	0.019
		106	0.003
		108	0.024
2	AHT137	131	0.409
		137	0.278
		141	0.024
		147	0.067
		149	0.190
		153	0.032
3	AHTH130	121	0.014
		123	0.500
		127	0.057
		129	0.168
		135	0.005
		139	0.254
		143	0.003
4	AHTh171-A	219	0.516
		225	0.155
		235	0.329
5	AHTh260	240	0.035
		244	0.257
		246	0.209
		250	0.083
		252	0.283
		254	0.120
		256	0.013
6	AHTk211	87	0.818
		91	0.040
		93	0.080
		97	0.059
		99	0.003
7	AHTk253	286	0.152
		288	0.406
		290	0.139
		292	0.302
8	C22.279	116	0.134
		118	0.257
		124	0.610
9	FH2001	132	0.553
		136	0.083
		140	0.107
		144	0.016
		148	0.021
		152	0.219
10	FH2054	148	0.005
		152	0.155
		156	0.583
		160	0.021
		164	0.118
		168	0.118
11	FH2848	234	0.340
		238	0.086
		242	0.374
		244	0.201
12	INRA21	95	0.757
		101	0.059
		103	0.184
13	INU005	124	0.029
		126	0.318
		128	0.503
		130	0.147
		132	0.003
14	INU030	144	0.511
		146	0.083
		150	0.388
		152	0.019
15	INU055	210	0.810
		212	0.064
		214	0.005
		218	0.120
16	LEI004	85	0.037
		95	0.789
		107	0.136
		109	0.005
		111	0.032
17	REN105L03	229	0.131
		231	0.326
		233	0.008
		237	0.235
		241	0.299
18	REN162C04	202	0.211
		204	0.184
		206	0.484
		208	0.120
19	REN169D01	202	0.003
		212	0.016
		216	0.064
		218	0.102
		220	0.805
		222	0.011
20	REN169O18	160	0.011
		162	0.417
		164	0.053
		166	0.003
		168	0.460
		170	0.056
21	REN247M23	268	0.032
		270	0.754
		272	0.061
		274	0.083
		276	0.011
		278	0.059
22	REN54P11	222	0.604
		226	0.061
		228	0.096
		232	0.051
		234	0.011
		236	0.016
		238	0.160
23	REN64E19	139	0.011
		145	0.709
		147	0.094
		153	0.187
24	VGL0760	12	0.003
		13	0.222
		14	0.612
		19.2	0.003
		20.2	0.027
		21.2	0.011
		22.2	0.096
		23.2	0.008
		24.2	0.019
25	VGL0910	12	0.650
		13	0.005
		17.1	0.003
		18.1	0.021
		19.1	0.053
		20.1	0.008
		21.1	0.112
		22.1	0.134
		23.1	0.013
26	VGL1063	8	0.150
		12	0.163
		13	0.032
		14	0.286
		15	0.024
		16	0.035
		17	0.003
		18	0.027
		19	0.251
		20	0.021
		21	0.003
		22	0.005
27	VGL1165	15	0.029
		16	0.003
		17	0.003
		18	0.123
		20	0.005
		21	0.618
		26	0.123
		27	0.005
		28	0.061
		30	0.027
		31	0.003
28	VGL1828	14	0.168
		15	0.110
		16	0.193
		17	0.037
		19	0.027
		20	0.463
		21	0.003
29	VGL2009	10	0.027
		13	0.075
		14	0.152
		15	0.738
		16	0.008
30	VGL2409	13	0.575
		14	0.003
		16	0.005
		17	0.102
		18	0.299
		19	0.016
31	VGL2918	12	0.008
		13	0.714
		14	0.222
		15	0.016
		16	0.008
		17.3	0.003
		19.3	0.029
32	VGL3008	13	0.011
		15	0.441
		16	0.032
		17	0.024
		18	0.420
		19	0.040
		20	0.032
33	VGL3235	13	0.134
		14	0.283
		15	0.011
		16	0.302
		17	0.150
		18	0.048
		19	0.067
		20	0.005

Standard genetic assessment based on 33 autosomal STR loci

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	187	6.030	2.627	0.574	0.576	0.006
	SE		0.370	0.159	0.025	0.024	0.010

Standard genetic assessment based on 7 STRs in the DLA region

Bernese Mountain Dog

		N	Na	Ne	Ho	He	F
	Mean	187	4.714	2.271	0.571	0.538	-0.059
	SE		0.171	0.165	0.049	0.044	0.006

Standard genetic assessment for individual STR loci

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	AHT121	187	8	2.579	0.594	0.612	0.030
2	AHT137	187	6	3.487	0.679	0.713	0.048
3	AHTH130	187	7	2.890	0.600	0.654	0.082
4	AHTh171-A	187	3	2.509	0.631	0.601	-0.049
5	AHTh260	187	7	4.707	0.797	0.788	-0.012
6	AHTk211	187	5	1.469	0.294	0.319	0.078
7	AHTk253	187	4	3.344	0.668	0.701	0.046
8	C22.279	187	3	2.196	0.551	0.545	-0.011
9	FH2001	187	6	2.678	0.674	0.627	-0.075
10	FH2054	187	6	2.551	0.620	0.608	-0.020
11	FH2848	187	4	3.301	0.722	0.697	-0.036
12	INRA21	187	3	1.639	0.364	0.390	0.067
13	INU005	187	5	2.657	0.647	0.624	-0.038
14	INU030	187	4	2.390	0.604	0.582	-0.039
15	INU055	187	4	1.482	0.326	0.325	-0.004
16	LEI004	187	5	1.555	0.299	0.357	0.161
17	REN105L03	187	5	3.722	0.706	0.731	0.035
18	REN162C04	187	4	3.055	0.636	0.673	0.054
19	REN169D01	187	6	1.509	0.348	0.337	-0.030
20	REN169O18	187	6	2.554	0.631	0.608	-0.037
21	REN247M23	187	6	1.713	0.406	0.416	0.024
22	REN54P11	187	7	2.458	0.572	0.593	0.035
23	REN64E19	187	4	1.832	0.481	0.454	-0.060
24	VGL0760	187	9	2.301	0.626	0.565	-0.107
25	VGL0910	187	9	2.192	0.535	0.544	0.017
26	VGL1063	187	12	5.049	0.840	0.802	-0.047
27	VGL1165	187	11	2.397	0.572	0.583	0.018
28	VGL1828	187	7	3.407	0.738	0.706	-0.045
29	VGL2009	187	5	1.742	0.396	0.426	0.071
30	VGL2409	187	6	2.321	0.540	0.569	0.051
31	VGL2918	187	7	1.785	0.422	0.440	0.039
32	VGL3008	187	7	2.665	0.663	0.625	-0.061
33	VGL3235	187	8	4.570	0.775	0.781	0.007

Standard genetic assessment for 7 STRs in the DLA region

Bernese Mountain Dog

#	Locus	N	Na	Ne	Ho	He	F
1	DLA I-3CCA	187	5	2.643	0.668	0.622	-0.075
2	DLA I-4ACA	187	5	2.631	0.663	0.620	-0.069
3	DLA I-4BCT	187	5	2.512	0.642	0.602	-0.066
4	DLA1131	187	5	2.036	0.540	0.509	-0.062
5	5ACA	187	5	2.074	0.535	0.518	-0.033
6	5ACT	187	4	2.619	0.663	0.618	-0.073
7	5BCA	187	4	1.379	0.283	0.275	-0.032

Veterinary Genetics Laboratory

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

Statistics and Breed-wide Allele Frequency - Bernese Mountain Dog

DLA Class I Haplotype Frequencies

DLA Class II Haplotype Frequencies

Allele Frequencies

Standard genetic assessment based on 33 autosomal STR loci

Standard genetic assessment based on 7 STRs in the DLA region

Standard genetic assessment for individual STR loci

Standard genetic assessment for 7 STRs in the DLA region

Contact the VGL

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